Human Gut Microbiome Atlas
GEOGRAPHY
SPECIES
DISEASES
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Country enrichment
Region enrichment
Disease enrichment
Disease depletion
Antibiotic resistance
Cazyme
Genus
Family
Order
Class
Phylum
Austria
China
Denmark
Fiji
Finland
France
Germany
India
Italy
Japan
Luxembourg
Madagascar
Mongolia
Peru
Spain
Sweden
Thailand
United Kingdom
United Republic of Tanzania
United States of America
European
Mixed
Non-westernized
Westernized
AD
Ankylosing
Atherosclerosis
Behcet
CA
CFS
Cirrhosis
CRC
Crohn's
CVD
GDM
Healthy
IGT
Melanoma
NAFLD
NSCLC
Obesity
Parkinson
RCC
Rheumatoid
T1D
T2D
UC
VKH
AD
Ankylosing
Atherosclerosis
Behcet
CA
CFS
Cirrhosis
CRC
Crohn's
CVD
GDM
Healthy
IGT
Melanoma
NAFLD
NSCLC
Obesity
Parkinson
RCC
Rheumatoid
T1D
T2D
UC
VKH
aac2
aac3_1
aac3_2
aac6
ant
aph
blaa
blab1
blab3
blac
blad
dfrA
erm
fos
qnr
sul
tetM
tetX
van
AA10
CBM10
CBM12
CBM13
CBM16
CBM2
CBM20
CBM21
CBM22
CBM23
CBM25
CBM26
CBM27
CBM3
CBM30
CBM32
CBM34
CBM35
CBM36
CBM37
CBM38
CBM4
CBM40
CBM41
CBM42
CBM46
CBM47
CBM48
CBM5
CBM50
CBM51
CBM54
CBM56
CBM57
CBM58
CBM6
CBM61
CBM62
CBM63
CBM65
CBM66
CBM67
CBM68
CBM70
CBM71
CBM72
CBM73
CBM74
CBM75
CBM76
CBM77
CBM78
CBM79
CBM80
CBM82
CBM83
CBM84
CBM9
COH1
COH2
DOC
GH1
GH10
GH101
GH102
GH103
GH104
GH105
GH106
GH107
GH108
GH109
GH11
GH110
GH111
GH112
GH113
GH114
GH115
GH116
GH117
GH119
GH120
GH121
GH123
GH125
GH126
GH127
GH128
GH129
GH13
GH13_10
GH13_11
GH13_12
GH13_13
GH13_14
GH13_16
GH13_18
GH13_19
GH13_2
Absiella
Acetobacter
Achromobacter
Acidaminococcus
Actinomyces
Adlercreutzia
Aeromonas
Agathobaculum
Aggregatibacter
Akkermansia
Alistipes
Allisonella
Alloprevotella
Anaerobutyricum
Anaerococcus
Anaerofilum
Anaerofustis
Anaeroglobus
Anaeromassilibacillus
Anaerostipes
Anaerotignum
Anaerotruncus
Atopobium
Azospirillum
Bacteroides
Barnesiella
Bifidobacterium
Bilophila
Blastocystis
Blautia
Brachyspira
Butyricimonas
Butyrivibrio
Caecibacter
Campylobacter
Candidatus Cibiobacter
Candidatus Gastranaerophilus
Candidatus Methanomethylophilus
Catabacter
Catenibacterium
Christensenella
Citrobacter
Cloacibacillus
Clostridioides
Clostridium
Colibacter
Collinsella
Comamonas
Coprobacillus
Coprobacter
Coprococcus
Coraliomargarita
Cryptobacterium
Culturomica
Dakarella
Desulfovibrio
Dialister
Dielma
Dorea
Drancourtella
Duodenibacillus
Eggerthella
Eisenbergiella
Emergencia
Enorma
Enterobacter
Enterococcus
Enteroscipio
Erysipelatoclostridium
Escherichia
Evtepia
Faecalibacterium
Faecalicatena
Faecalicoccus
Faecalimonas
Faecalitalea
Fenollaria
Flavonifractor
Fournierella
Fusicatenibacter
Fusobacterium
Gemella
Gemmiger
Gordonibacter
Granulicatella
Haemophilus
Hafnia
Helicobacter
Holdemanella
Holdemania
Hungatella
Intestinibacter
Intestinimonas
Klebsiella
Kluyvera
Lachnoanaerobaculum
Lachnoclostridium
Lachnospira
Lactobacillus
Lactococcus
Lawsonibacter
Leptotrichia
Leuconostoc
Libanicoccus
Mailhella
Marvinbryantia
Massiliomicrobiota
Mediterranea
Megamonas
Megasphaera
Merdimonas
Methanobrevibacter
Methanomassiliicoccus
Methanosphaera
Mitsuokella
Mobilibacterium
Monoglobus
Mordavella
Morganella
Negativibacillus
Neglecta
Niameybacter
Odoribacter
Olsenella
Oribacterium
Oscillibacter
Oxalobacter
Parabacteroides
Paraeggerthella
Paraprevotella
Parasutterella
Parvimonas
Peptoniphilus
Peptostreptococcus
Phascolarctobacterium
Phocea
Plesiomonas
Porphyromonas
Prevotella
Prevotellamassilia
Proteus
Providencia
Pseudoflavonifractor
Pyramidobacter
Raoultella
Rikenella
Romboutsia
Roseburia
Rubneribacter
Ruminiclostridium
Ruminococcus
Ruthenibacterium
Saccharopolyspora
Sanguibacteroides
Selenomonas
Sellimonas
Senegalimassilia
Slackia
Solobacterium
Sphaerochaeta
Streptococcus
Succinatimonas
Sutterella
Treponema
Turicibacter
Turicimonas
Tyzzerella
unclassified
unclassified Acidaminococcaceae
unclassified Akkermansiaceae
unclassified Alphaproteobacteria
unclassified Atopobiaceae
unclassified Bacteroidales
unclassified Barnesiellaceae
unclassified Betaproteobacteria
unclassified Candidatus Gastranaerophilales
unclassified Candidatus Melainabacteria
unclassified Christensenellaceae-Catabacteriaceae
unclassified Clostridiales
unclassified Clostridiales 1
unclassified Clostridiales 2
unclassified Clostridiales 3
unclassified Clostridiales 4
unclassified Clostridiales 5
unclassified Clostridiales 6
unclassified Clostridiales Family XIII. Incertae Sedis
unclassified Coriobacteriia
unclassified Desulfovibrionaceae
unclassified Eggerthellaceae
unclassified Elusimicrobia
unclassified Erysipelotrichaceae
unclassified Flavobacteriales
unclassified Lachnospiraceae
unclassified Lentisphaerae
unclassified Lentisphaeria
unclassified Methanomassiliicoccaceae
unclassified Muribaculaceae
unclassified Negativicutes 2
unclassified Odoribacteraceae
unclassified Opitutae
unclassified Oscillospiraceae
unclassified Peptoniphilaceae
unclassified Peptostreptococcaceae
unclassified Prevotellaceae
unclassified Proteobacteria
unclassified Rhodospirillaceae
unclassified Rhodospirillales
unclassified Ruminococcaceae
unclassified Selenomonadaceae
unclassified Succinivibrionaceae
unclassified Sutterellaceae
unclassified Tissierellia
unclassified Tissierellia 2
unclassified Veillonellaceae
unclassified Victivallales
unclassified_Acholeplasmatales
unclassified_Anaeroplasmataceae
unclassified_Erysipelotrichaceae
unclassified_ML615J-28_Tenericutes
unclassified_RF39_Mollicutes
Veillonella
Victivallis
Weissella
Acetobacteraceae
Acidaminococcaceae
Actinomycetaceae
Aeromonadaceae
Akkermansiaceae
Alcaligenaceae
Anaeroplasmataceae
Atopobiaceae
Bacteroidaceae
Barnesiellaceae
Bifidobacteriaceae
Brachyspiraceae
Campylobacteraceae
Carnobacteriaceae
Catabacteriaceae
Christensenellaceae-Catabacteriaceae
Clostridiaceae
Clostridiales Family XIII. Incertae Sedis
Comamonadaceae
Coriobacteriaceae
Desulfovibrionaceae
Eggerthellaceae
Enterobacteriaceae
Enterococcaceae
Erysipelotrichaceae
Erysipelotrichaceae 2
Fusobacteriaceae
Hafniaceae
Helicobacteraceae
Lachnospiraceae
Lactobacillaceae
Leptotrichiaceae
Leuconostocaceae
Methanobacteriaceae
Methanomassiliicoccaceae
Morganellaceae
Muribaculaceae
Odoribacteraceae
Oscillospiraceae
Oxalobacteraceae
Pasteurellaceae
Peptoniphilaceae
Peptostreptococcaceae
Porphyromonadaceae
Prevotellaceae
Pseudonocardiaceae
Puniceicoccaceae
Rhodospirillaceae
Rikenellaceae
Ruminococcaceae
Selenomonadaceae
Spirochaetaceae
Staphylococcaceae 2
Streptococcaceae
Succinivibrionaceae
Sutterellaceae
Synergistaceae
Tannerellaceae
unclassified
unclassified Alphaproteobacteria
unclassified Bacteroidales
unclassified Betaproteobacteria
unclassified Candidatus Gastranaerophilales
unclassified Candidatus Melainabacteria
unclassified Clostridiales
unclassified Clostridiales 1
unclassified Clostridiales 2
unclassified Clostridiales 3
unclassified Clostridiales 4
unclassified Clostridiales 5
unclassified Clostridiales 6
unclassified Coriobacteriia
unclassified Elusimicrobia
unclassified Enterobacterales
unclassified Eukaryota
unclassified Flavobacteriales
unclassified Lentisphaerae
unclassified Lentisphaeria
unclassified Negativicutes 2
unclassified Opitutae
unclassified Proteobacteria
unclassified Rhodospirillales
unclassified Tissierellia
unclassified Tissierellia 2
unclassified Victivallales
unclassified_Acholeplasmatales
unclassified_ML615J-28_Tenericutes
unclassified_RF39_Mollicutes
Veillonellaceae
Victivallaceae
Acholeplasmatales
Acidaminococcales
Actinomycetales
Aeromonadales
Anaeroplasmatales
Bacillales
Bacteroidales
Bifidobacteriales
Brachyspirales
Burkholderiales
Campylobacterales
Candidatus Gastranaerophilales
Clostridiales
Coriobacteriales
Desulfovibrionales
Eggerthellales
Enterobacterales
Erysipelotrichales
Erysipelotrichales 2
Flavobacteriales
Fusobacteriales
Lactobacillales
Methanobacteriales
Methanomassiliicoccales
ML615J-28_Tenericutes
Pasteurellales
Pseudonocardiales
Puniceicoccales
RF39_Mollicutes
Rhodospirillales
Selenomonadales
Spirochaetales
Synergistales
Tissierellales
unclassified
unclassified Alphaproteobacteria
unclassified Betaproteobacteria
unclassified Candidatus Melainabacteria
unclassified Coriobacteriia
unclassified Elusimicrobia
unclassified Eukaryota
unclassified Lentisphaerae
unclassified Lentisphaeria
unclassified Negativicutes 2
unclassified Opitutae
unclassified Proteobacteria
unclassified Tissierellia
unclassified Tissierellia 2
unclassified Tissierellia 3
Veillonellales
Verrucomicrobiales
Victivallales
Actinobacteria
Alphaproteobacteria
Bacilli
Bacteroidia
Betaproteobacteria
Clostridia
Coriobacteriia
Deltaproteobacteria
Epsilonproteobacteria
Flavobacteriia
Fusobacteriia
Gammaproteobacteria
Lentisphaeria
Methanobacteria
Mollicutes
Mollicutes 2
Negativicutes
Negativicutes 2
Opitutae
RF3_Tenericutes
Spirochaetia
Synergistia
Tenericutes 2
Tenericutes 3
Thermoplasmata
Tissierellia
Tissierellia 2
Tissierellia 3
unclassified
unclassified Candidatus Melainabacteria
unclassified Elusimicrobia
unclassified Eukaryota
unclassified Lentisphaerae
unclassified Proteobacteria
Verrucomicrobiae
Actinobacteria
Bacteroidetes
Candidatus Melainabacteria
Elusimicrobia
Euryarchaeota
Firmicutes
Fusobacteria
Lentisphaerae
Proteobacteria
Spirochaetes
Synergistetes
Tenericutes
unclassified
unclassified Eukaryota
Verrucomicrobia
Downloads
Species abundance matrix:
vect_atlas.csv.gz
Sample metadata table:
sampleID.csv
Genome-scale model:
MSP_GEM_models.zip
Dataset references:
bioproj.csv
