GEOGRAPHY SPECIES DISEASES ABOUT DOWNLOADS

Species summary

Diversity of human gut microbiome is presented in the Tree of Life with an interactive and searchable setting. Genera of 15 representative phyla of human gut microbiota, from the largest phyla, Firmicutes, to the smallest, Synergistetes, were provided with different colors. Different rank of taxonomy, from genus to superkingdom, can be presented either on the Tree of Life or search window.



LifeArchaeaBacteriaEukaryotaunclassifiedEuryarchaeotaActinobacteriaBacteroidetesCandidatus MelainabacteriaElusimicrobiaFirmicutesFusobacteriaLentisphaeraeProteobacteriaSpirochaetesSynergistetesTenericutesunclassifiedVerrucomicrobiaunclassified EukaryotaunclassifiedMethanobacteriaThermoplasmataActinobacteriaCoriobacteriiaBacteroidiaFlavobacteriiaunclassified Candidatus Melainabacteriaunclassified ElusimicrobiaBacilliClostridiaNegativicutesNegativicutes 2TissierelliaTissierellia 2Tissierellia 3FusobacteriiaLentisphaeriaunclassified LentisphaeraeAlphaproteobacteriaBetaproteobacteriaDeltaproteobacteriaEpsilonproteobacteriaGammaproteobacteriaunclassified ProteobacteriaSpirochaetiaSynergistiaMollicutesMollicutes 2RF3_TenericutesTenericutes 2Tenericutes 3unclassifiedOpitutaeVerrucomicrobiaeunclassified EukaryotaunclassifiedMethanobacterialesMethanomassiliicoccalesActinomycetalesBifidobacterialesPseudonocardialesCoriobacterialesEggerthellalesunclassified CoriobacteriiaBacteroidalesFlavobacterialesCandidatus Gastranaerophilalesunclassified Candidatus Melainabacteriaunclassified ElusimicrobiaBacillalesLactobacillalesClostridialesAcidaminococcalesSelenomonadalesVeillonellalesunclassified Negativicutes 2Tissierellalesunclassified Tissierelliaunclassified Tissierellia 2unclassified Tissierellia 3Fusobacterialesunclassified LentisphaeriaVictivallalesunclassified LentisphaeraeRhodospirillalesunclassified AlphaproteobacteriaBurkholderialesunclassified BetaproteobacteriaDesulfovibrionalesCampylobacteralesAeromonadalesEnterobacteralesPasteurellalesunclassified ProteobacteriaBrachyspiralesSpirochaetalesSynergistalesRF39_MollicutesErysipelotrichalesML615J-28_TenericutesAnaeroplasmatalesAcholeplasmatalesErysipelotrichales 2unclassifiedPuniceicoccalesunclassified OpitutaeVerrucomicrobialesunclassified EukaryotaunclassifiedMethanobacteriaceaeMethanomassiliicoccaceaeActinomycetaceaeBifidobacteriaceaePseudonocardiaceaeAtopobiaceaeCoriobacteriaceaeEggerthellaceaeunclassified CoriobacteriiaBacteroidaceaeBarnesiellaceaeMuribaculaceaeOdoribacteraceaePorphyromonadaceaePrevotellaceaeRikenellaceaeTannerellaceaeunclassified Bacteroidalesunclassified Flavobacterialesunclassified Candidatus Gastranaerophilalesunclassified Candidatus Melainabacteriaunclassified ElusimicrobiaStaphylococcaceae 2CarnobacteriaceaeEnterococcaceaeLactobacillaceaeLeuconostocaceaeStreptococcaceaeCatabacteriaceaeChristensenellaceae-CatabacteriaceaeClostridiaceaeLachnospiraceaeOscillospiraceaePeptostreptococcaceaeRuminococcaceaeunclassified Clostridialesunclassified Clostridiales 1unclassified Clostridiales 2unclassified Clostridiales 3unclassified Clostridiales 4unclassified Clostridiales 5unclassified Clostridiales 6AcidaminococcaceaeAcidaminococcaceaeSelenomonadaceaeVeillonellaceaeVeillonellaceaeunclassified Negativicutes 2Peptoniphilaceaeunclassified Tissierelliaunclassified Tissierellia 2Clostridiales Family XIII Incertae SedisPeptostreptococcaceaeFusobacteriaceaeLeptotrichiaceaeunclassified Lentisphaeriaunclassified VictivallalesVictivallaceaeunclassified LentisphaeraeAcetobacteraceaeRhodospirillaceaeunclassified Rhodospirillalesunclassified AlphaproteobacteriaAlcaligenaceaeComamonadaceaeOxalobacteraceaeSutterellaceaeunclassified BetaproteobacteriaDesulfovibrionaceaeCampylobacteraceaeHelicobacteraceaeAeromonadaceaeSuccinivibrionaceaeEnterobacteriaceaeHafniaceaeMorganellaceaeunclassified EnterobacteralesPasteurellaceaeunclassified ProteobacteriaBrachyspiraceaeSpirochaetaceaeSynergistaceaeunclassified_RF39_MollicutesErysipelotrichaceaeunclassified_ML615J-28_TenericutesAnaeroplasmataceaeunclassified_AcholeplasmatalesErysipelotrichaceae 2unclassifiedPuniceicoccaceaeunclassified OpitutaeAkkermansiaceaeunclassified Eukaryotaunclassified (2) Methanobrevibacter (1) Methanosphaera (1) Candidatus Methanomethylophilus (1) Methanomassiliicoccus (3) unclassified Methanomassiliicoccaceae (1) Actinomyces (12) Bifidobacterium (1) Saccharopolyspora (2) Atopobium (2) Libanicoccus (10) Olsenella (3) unclassified Atopobiaceae (8) Collinsella (1) Enorma (1) Adlercreutzia (1) Cryptobacterium (8) Eggerthella (1) Enteroscipio (4) Gordonibacter (1) Paraeggerthella (1) Rubneribacter (1) Senegalimassilia (3) Slackia (3) unclassified Eggerthellaceae (2) unclassified Coriobacteriia (78) Bacteroides (2) Mediterranea (2) Barnesiella (4) Coprobacter (6) unclassified Barnesiellaceae (45) unclassified Muribaculaceae (7) Butyricimonas (1) Culturomica (2) Odoribacter (1) Sanguibacteroides (3) unclassified Odoribacteraceae (7) Porphyromonas (1) Alloprevotella (2) Paraprevotella (64) Prevotella (1) Prevotellamassilia (14) unclassified Prevotellaceae (36) Alistipes (1) Rikenella (16) Parabacteroides (23) unclassified Bacteroidales (2) unclassified Flavobacteriales (1) Candidatus Gastranaerophilus (25) unclassified Candidatus Gastranaerophilales (3) unclassified Candidatus Melainabacteria (4) unclassified Elusimicrobia (1) Gemella (1) Granulicatella (5) Enterococcus (22) Lactobacillus (1) Leuconostoc (2) Weissella (2) Lactococcus (18) Streptococcus (5) Catabacter (5) Catabacter (1) Christensenella (41) unclassified Christensenellaceae-Catabacteriaceae (19) Clostridium (4) Anaerobutyricum (5) Anaerostipes (1) Anaerotignum (39) Blautia (2) Butyrivibrio (8) Coprococcus (6) Dorea (1) Drancourtella (3) Eisenbergiella (3) Faecalicatena (1) Faecalimonas (1) Fusicatenibacter (2) Hungatella (1) Lachnoanaerobaculum (52) Lachnoclostridium (2) Lachnospira (1) Marvinbryantia (1) Merdimonas (1) Mordavella (1) Niameybacter (2) Oribacterium (32) Roseburia (1) Sellimonas (2) Tyzzerella (135) unclassified Lachnospiraceae (29) Oscillibacter (27) unclassified Oscillospiraceae (2) Clostridioides (1) Anaerofilum (4) Anaeromassilibacillus (4) Anaerotruncus (1) Candidatus Cibiobacter (16) Faecalibacterium (3) Fournierella (7) Gemmiger (2) Negativibacillus (1) Neglecta (1) Phocea (5) Ruminiclostridium (32) Ruminococcus (1) Ruthenibacterium (91) unclassified Ruminococcaceae (15) Flavonifractor (3) Intestinimonas (14) unclassified Clostridiales (91) unclassified Clostridiales 1 (106) unclassified Clostridiales 2 (1) Monoglobus (18) unclassified Clostridiales 3 (41) unclassified Clostridiales 4 (7) Agathobaculum (69) unclassified Clostridiales 5 (2) Evtepia (15) Flavonifractor (3) IntestinimonasLawsonibacter (2) Pseudoflavonifractor (3) unclassified Clostridiales 6 (9) Acidaminococcus (6) Phascolarctobacterium (12) unclassified Acidaminococcaceae (3) Megamonas (2) Mitsuokella (3) Selenomonas (3) unclassified Selenomonadaceae (2) Megasphaera (7) Allisonella (1) Anaeroglobus (1) Caecibacter (2) Colibacter (1) Dialister (10) Megasphaera (7) unclassified Veillonellaceae (4) Veillonella (10) unclassified Negativicutes 2 (5) Anaerococcus (1) Parvimonas (2) Peptoniphilus (3) unclassified Peptoniphilaceae (1) Fenollaria (1) unclassified Tissierellia (1) Anaerofustis (1) unclassified Tissierellia 2 (1) Emergencia (1) Mobilibacterium (1) unclassified Clostridiales Family XIII Incertae Sedis (undefined) Intestinibacter (2) Peptostreptococcus (3) Romboutsia (1) unclassified Peptostreptococcaceae (1) Fusobacterium (14) Leptotrichia (1) unclassified Lentisphaeria (7) unclassified Victivallales (4) Victivallis (1) unclassified Lentisphaerae (2) Acetobacter (1) Azospirillum (3) unclassified Rhodospirillaceae (5) unclassified Rhodospirillales (5) unclassified Alphaproteobacteria (1) Achromobacter (1) Comamonas (1) Oxalobacter (2) Dakarella (1) Duodenibacillus (1) Parasutterella (2) Sutterella (20) Turicimonas (1) unclassified Sutterellaceae (13) unclassified Betaproteobacteria (1) Bilophila (4) Desulfovibrio (10) Mailhella (2) unclassified Desulfovibrionaceae (1) Campylobacter (2) Helicobacter (1) Aeromonas (2) Succinatimonas (4) unclassified Succinivibrionaceae (3) Citrobacter (4) Enterobacter (7) Escherichia (2) Klebsiella (7) Kluyvera (1) Raoultella (1) Hafnia (1) Morganella (1) Proteus (2) Providencia (1) Plesiomonas (1) Aggregatibacter (1) Haemophilus (6) unclassified Proteobacteria (1) Brachyspira (1) Sphaerochaeta (1) Treponema (1) Cloacibacillus (3) Pyramidobacter (1) unclassified_RF39_Mollicutes (99) Absiella (1) Catenibacterium (2) Coprobacillus (1) Dielma (1) Erysipelatoclostridium (8) Faecalicoccus (1) Faecalitalea (2) Holdemanella (6) Holdemania (3) Massiliomicrobiota (2) Solobacterium (1) unclassified Erysipelotrichaceae (2) unclassified_Erysipelotrichaceae (9) unclassified_ML615J-28_Tenericutes (12) unclassified_Anaeroplasmataceae (22) unclassified_Acholeplasmatales (3) Turicibacter (2) unclassified (61) Coraliomargarita (1) unclassified Opitutae (8) Akkermansia (4) unclassified Akkermansiaceae (2) Blastocystis (5) unclassified (61) ActinobacteriaBacteroidetesCandidatus melainabacteriaElusimicrobiaEuryarchaeotaFirmicutesFusobacteriaLentisphaeraeProteobacteriaSpirochaetesSynergistetesTenericutesunclassifiedunclassified eukaryotaVerrucomicrobia