Species: | Escherichia coli |
---|---|
Genus: | Escherichia |
Family: | Enterobacteriaceae |
Order: | Enterobacterales |
Class: | Gammaproteobacteria |
Phylum: | Proteobacteria |
Gut inflow: | 0.437 |
---|---|
Gut outflow: | 0.379 |
Disease Association: |
Ankylosing spondylitis (ES=0.310262) Atherosclerosis (ES=0.301437) Colorectal cancer (ES=0.319117) Colorectal cancer (ES=0.33148) Crohn's disease (ES=0.316171) NAFLD (ES=1) Type 1 diabetes (ES=0.667388) Type 1 diabetes (ES=0.349634) Type 2 diabetes (ES=0.460432) |
Region Enrichment: | India, Madagascar |
Shape | Rod-shaped; Pleomorphic-shaped |
---|---|
Gram staining | Gram-; Gram+ |
Motility | Motile; Chemotactic; Nonmotile |
Oxygen Requirement | Facultative; Anaerobe; Aerobe |
Sporulation | Nonsporulating; Sporulating |
Ecosystem | Unclassified; Human; Birds; Animal; Mammals; Plants; Terrestrial; Aquatic; Wastewater; Vertebrates |
Ecosystem Type | Unclassified; Excretory system; Nervous system; Skin; Genetically modified; Respiratory system; Soil; Reproductive system; Marine; Milk; Circulatory system; Tissue; Meat products; Nematoda; Digestive system |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00020 - Citrate cycle (TCA cycle)
ko00030 - Pentose phosphate pathway
ko00040 - Pentose and glucuronate interconversions
ko00051 - Fructose and mannose metabolism
ko00052 - Galactose metabolism
ko00053 - Ascorbate and aldarate metabolism
ko00061 - Fatty acid biosynthesis
ko00071 - Fatty acid degradation
ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis
ko00230 - Purine metabolism
ko00240 - Pyrimidine metabolism
ko00250 - Alanine, aspartate and glutamate metabolism
ko00260 - Glycine, serine and threonine metabolism
ko00270 - Cysteine and methionine metabolism
ko00281 - Geraniol degradation
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00330 - Arginine and proline metabolism
ko00340 - Histidine metabolism
ko00350 - Tyrosine metabolism
ko00360 - Phenylalanine metabolism
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00410 - beta-Alanine metabolism
ko00430 - Taurine and hypotaurine metabolism
ko00440 - Phosphonate and phosphinate metabolism
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00480 - Glutathione metabolism
ko00500 - Starch and sucrose metabolism
ko00511 - Other glycan degradation
ko00520 - Amino sugar and nucleotide sugar metabolism
ko00521 - Streptomycin biosynthesis
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00564 - Glycerophospholipid metabolism
ko00620 - Pyruvate metabolism
ko00630 - Glyoxylate and dicarboxylate metabolism
ko00633 - Nitrotoluene degradation
ko00640 - Propanoate metabolism
ko00650 - Butanoate metabolism
ko00660 - C5-Branched dibasic acid metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00720 - Carbon fixation pathways in prokaryotes
ko00730 - Thiamine metabolism
ko00740 - Riboflavin metabolism
ko00750 - Vitamin B6 metabolism
ko00760 - Nicotinate and nicotinamide metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00790 - Folate biosynthesis
ko00900 - Terpenoid backbone biosynthesis
ko00903 - Limonene and pinene degradation
ko00910 - Nitrogen metabolism
ko00920 - Sulfur metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko00983 - Drug metabolism - other enzymes
ko01040 - Biosynthesis of unsaturated fatty acids
ko01053 - Biosynthesis of siderophore group nonribosomal peptides
ko01110 - Biosynthesis of secondary metabolites
ko01120 - Microbial metabolism in diverse environments
ko01130 - Biosynthesis of antibiotics
ko02010 - ABC transporters
ko02020 - Two-component system
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko02060 - Phosphotransferase system (PTS)
ko03010 - Ribosome
ko03018 - RNA degradation
ko03030 - DNA replication
ko03060 - Protein export
ko03070 - Bacterial secretion system
ko03410 - Base excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
ko05111 - Biofilm formation - Vibrio cholerae
M00002 - Glycolysis, core module involving three-carbon compounds
M00003 - Gluconeogenesis, oxaloacetate => fructose-6P
M00004 - Pentose phosphate pathway (Pentose phosphate cycle)
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00009 - Citrate cycle (TCA cycle, Krebs cycle)
M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00011 - Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00012 - Glyoxylate cycle
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00018 - Threonine biosynthesis, aspartate => homoserine => threonine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00021 - Cysteine biosynthesis, serine => cysteine
M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00027 - GABA (gamma-Aminobutyrate) shunt
M00046 - Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
M00048 - Inosine monophosphate biosynthesis, PRPP + glutamine => IMP
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00051 - Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP
M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A
M00061 - D-Glucuronate degradation
M00063 - CMP-KDO biosynthesis
M00064 - ADP-L-glycero-D-manno-heptose biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00115 - NAD biosynthesis, aspartate => NAD
M00116 - Menaquinone biosynthesis, chorismate => menaquinol
M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00121 - Heme biosynthesis, glutamate => heme
M00122 - Cobalamin biosynthesis, cobinamide => cobalamin
M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P
M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P
M00133 - Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00136 - GABA biosynthesis, prokaryotes, putrescine => GABA
M00144 - NADH
M00149 - Succinate dehydrogenase, prokaryotes
M00150 - Fumarate reductase, prokaryotes
M00153 - Cytochrome bd ubiquinol oxidase
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00165 - Reductive pentose phosphate cycle (Calvin cycle)
M00167 - Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P
M00176 - Assimilatory sulfate reduction, sulfate => H2S
M00308 - Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
M00345 - Formaldehyde assimilation, ribulose monophosphate pathway
M00364 - C10-C20 isoprenoid biosynthesis, bacteria
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00417 - Cytochrome o ubiquinol oxidase
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00530 - Dissimilatory nitrate reduction, nitrate => ammonia
M00533 - Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00545 - Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose
M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P
M00552 - D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00555 - Betaine biosynthesis, choline => betaine
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00575 - Pertussis pathogenicity signature, T1SS
M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00580 - Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
M00631 - D-Galacturonate degradation (bacteria)
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00696 - Multidrug resistance, efflux pump AcrEF-TolC
M00697 - Multidrug resistance, efflux pump MdtEF-TolC
M00698 - Multidrug resistance, efflux pump BpeEF-OprC
M00705 - Multidrug resistance, efflux pump MepA
M00718 - Multidrug resistance, efflux pump MexAB-OprM
M00745 - Imipenem resistance, repression of porin OprD
M00746 - Multidrug resistance, repression of porin OmpF
M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N
M00793 - dTDP-L-rhamnose biosynthesis
M00843 - L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Actin-based motility
Adherence
Adhesion
Biofilm
Capsule
Cell motility
Cell surface and membrane proteins
Cell-to-cell spread
Cellular metabolism
Chaperone
Cytotoxin
Drug efflux system
Escape from the phagosome
Fimbriae
Heme uptake
Inhibition of phagolysosome formation
Intracellular survival and replication
Invasion
Iron uptake
Lps (lipopolysaccharide)
Modulate host immune response
Protease
Quorum sensing system
Regulation of gene expression
Secretion
Serum resistance
Stress
Two-component system
Virulence
Zinc uptake
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) (ID:STM474_0645)
16 kDa heat shock protein A (ID:SL1344_3776)
16 kDa heat shock protein B (ID:c4606)
2-ketobutyrate formate-lyase (EC 2.3.1.-) @ Pyruvate formate-lyase (EC 2.3.1.54) (ID:Z4466)
2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor (ID:SL1344_3638)
3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase (EC 2.3.1.245) (ID:SL1344_4027)
3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (ID:S0967)
3'-to-5' exoribonuclease RNase R (ID:S4602)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) (ID:STM474_3165)
5-hydroxyisourate hydrolase (EC 3.5.2.17) (ID:Z3062)
ABC transporter ATP-binding protein YddA (ID:Z2212)
ABC transporter protein IroC (ID:APECO1_O1CoBM140)
Aerobactin siderophore receptor IutA @ TonB-dependent siderophore receptor (ID:APECO1_O1CoBM168)
Aerobactin synthase (EC 6.3.2.39), aerobactin biosynthesis protein IucC (ID:APECO1_O1CoBM170)
Ankyrin-repeat protein A (ID:Z5608)
Arylsulfatase (EC 3.1.6.1) (ID:c4719)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ID:STM14_4260)
ATP-dependent helicase HrpA (ID:Z2313)
BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)
Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ID:Z4283)
Capsular polysaccharide export system protein KpsC (ID:c3690)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (ID:Z0037)
Carbon starvation protein A (ID:SL1344_0588)
CFA/I fimbrial major subunit (ID:Z0360)
Chaperone protein FimC (ID:c5395)
Chaperone protein HscC (ID:STM474_0680)
Chorismate synthase (EC 4.2.3.5) (ID:t0480)
Cobalamin synthase (EC 2.7.8.26) (ID:SG2041)
Colanic acid biosynthesis glycosyl transferase WcaE (ID:c2581)
Copper/silver efflux RND transporter, outer membrane protein CusC (ID:CE10_0570)
Curli production assembly/transport component CsgE (ID:STM1141)
Curli production assembly/transport component CsgF (ID:SL1344_1077)
Curli production assembly/transport component CsgG (ID:STM14_1303)
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) (ID:SL1344_0436)
Cytotoxic necrotizing factor (ID:UTI89_C4921)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (ID:Z4251)
D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)
D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) (ID:b3137)
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)
Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) (ID:c1081)
Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) @ Dipeptide chemoreceptor (ID:c4361)
DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)
DNA-binding transcriptional dual regulator SoxS (ID:STM14_5127)
DTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59) (ID:c4711)
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (ID:Z4136)
Exonuclease SbcD (ID:STM474_0413)
Ferric siderophore receptor, TonB dependent (ID:c2518)
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)
Fimbrin-like protein FimI (ID:c5394)
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) (ID:STM3453)
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) (ID:STM474_3621)
Formate efflux transporter FocA (ID:SL1344_0911)
Galactose/methyl galactoside ABC transporter, ATP-binding protein MglA (EC 3.6.3.17) (ID:Z3404)
Gluconokinase (EC 2.7.1.12) (ID:SL1344_4415)
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (ID:SL1344_2072)
Glycosyltransferase IroB (ID:APECO1_O1CoBM141)
GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) (ID:S2725)
GTP-binding and nucleic acid-binding protein YchF (ID:c1661)
H repeat-associated protein, YhhI family (ID:Z0275)
Hha toxicity modulator TomB (ID:STM474_0494)
Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)
Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)
HtrA protease/chaperone protein (ID:SF285071_0233)
Hybrid sensory histidine kinase in two-component regulatory system with EvgA (ID:Z3632)
Hydroxypyruvate isomerase (EC 5.3.1.22) (ID:SL1344_0511)
Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)
IncF plasmid conjugative transfer surface exclusion protein TraT (ID:EC042_pAA071)
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain (ID:S2726)
Invasion protein IbeA (ID:APECO1_2093)
L-lysine 6-monooxygenase [NADPH] (EC 1.14.13.59), aerobactin biosynthesis protein IucD @ Siderophore biosynthesis protein, monooxygenase (ID:SF3718)
Lipid A biosynthesis myristoyltransferase (EC 2.3.1.243) (ID:SFK218_2097)
Lipid A phosphoethanolamine transferase EptA/PmrC (EC 2.7.8.43) (ID:SL1344_4230)
Lipopolysaccharide core heptose(I) kinase RfaP (ID:STM14_4482)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)
Low molecular weight protein-tyrosine-phosphatase (EC 3.1.3.48) => Etp (ID:BWG_0834)
Low-affinity inorganic phosphate transporter (ID:Z4341)
Lysine/cadaverine antiporter membrane protein CadB (ID:STM474_2663)
Maltodextrin ABC transporter, ATP-binding protein MsmX (ID:Z2463)
Manganese ABC transporter, ATP-binding protein SitB (ID:c1599)
Manganese ABC transporter, periplasmic-binding protein SitA (ID:SF1365)
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)
Minor curlin subunit CsgB, nucleation component of curlin monomers (ID:SL1344_1080)
Monothiol glutaredoxin GrxD (ID:E2348C_1740)
Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)
Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)
N-(3-oxohexanoyl)-L-homoserine lactone-binding transcriptional activator @ N-(3-oxooctanoyl)-L-homoserine lactone-binding transcriptional activator (ID:Z3004)
N-methyl-L-tryptophan oxidase, SolA (ID:SL1344_1097)
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)
N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase (EC 6.3.2.38), aerobactin biosynthesis protein IucA (ID:SFV_3854)
N6-hydroxylysine O-acetyltransferase (EC 2.3.1.102), aerobactin biosynthesis protein IucB @ Siderophore synthetase small component, acetyltransferase (ID:APECO1_O1CoBM171)
Na+/H+-dicarboxylate symporter (ID:Z4942)
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1) (ID:SL1344_2164)
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (ID:STM2323.S)
O-antigen ligase (ID:c4448)
Outer membrane porin OmpC (ID:SF2299)
Outer membrane porin OmpF (ID:c1071)
Outer membrane protein A precursor (ID:b0957)
Outer membrane protein A precursor (ID:c1093)
Outer Membrane Siderophore Receptor IroN (ID:APECO1_O1CoBM137)
Outer Membrane Siderophore Receptor IroN (ID:SDY_1022)
Outer membrane usher protein FimD (ID:c5396)
Outer membrane usher protein FimD (ID:HMPREF0358_4708)
Outer membrane usher protein FimD (ID:Z2203)
Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)
Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) (ID:SL1344_0566)
Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) (ID:SL1344_3870)
Per-activated serine protease autotransporter enterotoxin EspC (ID:c0393)
Per-activated serine protease autotransporter enterotoxin EspC / autotransporter domain, T5aSS type secretion (ID:EC042_4593)
Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)
Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)
Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor (ID:SF2457T_4958)
Periplasmic fimbrial chaperone (ID:c3589)
Periplasmic thiol:disulfide interchange protein DsbA (ID:SFV_3641)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)
Phosphate transport system regulatory protein PhoU (ID:c4648)
Phosphatidate cytidylyltransferase (EC 2.7.7.41) (ID:Z2318)
Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue (ID:c4914)
Phosphomannomutase (EC 5.4.2.8) => Colanic acid (ID:c2557)
Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (ID:STM14_5016)
Probable 9-O-acetyl-N-acetylneuraminic acid deacetylase (ID:Z5905)
Probable endopeptidase NlpC (ID:SL1344_1277)
Protein FimF (regulates length and adhesion of type 1 fimbriae) (ID:c5397)
Protein FimG (regulates length and adhesion of type 1 fimbriae) (ID:c5399)
Protein MtfA (ID:STM474_2081)
Protein RhsA (ID:Z5014)
PTS system, galactitol-specific IIC component (ID:b2092)
PTS system, galactosamine-specific IIB component (ID:b3138)
PTS system, galactosamine-specific IIC component (ID:b3139)
PTS system, N,N'-diacetylchitobiose-specific IIB component (EC 2.7.1.196) (ID:SL1344_1247)
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) (ID:STM474_0956)
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) (ID:b1224)
RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein (ID:SL1344_1478)
RNA polymerase sigma factor RpoS (ID:SEN2763)
RNA polymerase-binding transcription factor DksA (ID:S0140)
SbmA protein (ID:c0482)
Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)
Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)
Spermidine export protein MdtJ (ID:SL1344_1412)
Stress response diiron-containing protein YciF (ID:STM474_1746)
Stringent starvation protein A (ID:STM14_4033)
Superoxide dismutase [Fe] (EC 1.15.1.1) (ID:SFV_1678)
T1SS secreted agglutinin RTX (ID:Z0609)
Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) (ID:b2095)
Thioredoxin 2 (ID:Z3867)
Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) (ID:c3566)
Threonine catabolic operon transcriptional activator TdcA (ID:SL1344_3217)
Threonine-rich inner membrane protein GfcA (ID:BWG_0839)
TonB-dependent hemin, ferrichrome receptor (ID:SDY_3554)
TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)
TonB-ExbBD energy transducing system, TonB subunit (ID:Sd1012_3335)
Transketolase (EC 2.2.1.1) (ID:c3520)
Translation initiation factor SUI1-related protein (ID:SL1344_1638)
Tricarboxylate transport transcriptional regulator TctD => Citrate response regulator CitB (ID:STM474_0647)
Trilactone hydrolase IroD (ID:APECO1_O1CoBM139)
Trk potassium uptake system protein TrkA (ID:Z4660)
Tryptophan synthase beta chain (EC 4.2.1.20) (ID:Z2550)
Type 1 fimbrae adaptor subunit FimG (ID:Z2205)
Type 1 fimbriae regulatory protein FimB (ID:c5391)
Type 1 fimbriae regulatory protein FimE (ID:c5392)
Type IV pilin PilA (ID:Z0118)
Type-1 fimbrial protein, A chain (ID:Z5912)
Tyrosine-protein kinase (EC 2.7.10.2) (ID:BWG_0833)
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (ID:STM0226)
UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase WaaW (EC 2.4.1.-) (ID:c4450)
UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (ID:SL1344_2057)
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (ID:SEN3544)
UDP-glucuronate:LPS(HepIII) glycosyltransferase WaaH (ID:Z5042)
Uncharacterized ferredoxin-like protein YdhY (ID:Z2702)
Uncharacterized ferredoxin-like protein YfhL (ID:SL1344_2538)
Uncharacterized glycosyltransferase YcjM (ID:c1780)
Uncharacterized HTH-type transcriptional regulator YfhH (ID:Z3841)
Uncharacterized lipoprotein GfcD (ID:BWG_0836)
Uncharacterized lipoprotein YdeK (ID:Z2195)
Uncharacterized lipoprotein YmcC precursor (ID:BWG_0838)
Uncharacterized outer membrane protein YpjA (ID:Z3948)
Uncharacterized protease YegQ (ID:SL1344_2112)
Uncharacterized protein clustered with Type I restriction-modification system (ID:SL1344_3720)
Uncharacterized protein GfcC (ID:BWG_0837)
Uncharacterized protein YaiT (ID:STM474_0388)
Uncharacterized protein YaiT (ID:Z0469)
Uncharacterized protein YfjI (ID:Z1126)
Uncharacterized protein YgeP (ID:Z4200)
Uncharacterized protein YhiJ (ID:Z4887)
Uncharacterized protein YjaG (ID:SL1344_4108)
Uncharacterized protein YjcF (ID:Z5665)
Uncharacterized protein YjeJ (ID:Z5750)
Uncharacterized protein YneK (ID:Z2176)
Uncharacterized protein YpjB (ID:Z3950)
Uncharacterized protein, YdfU family (ID:Z2056)
Uncharacterized transporter YfdV (ID:Z3635)
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) (ID:S3902)
Universal stress protein F (ID:STM474_1664)
UPF0118 inner membrane protein YdiK (ID:SL1344_1298)
UPF0187 protein YneE (ID:STM474_1538)
Ureidoglycolate dehydrogenase (EC 1.1.1.154) (ID:SL1344_0521)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:SL1344_2075)
Zinc ABC transporter, ATP-binding protein ZnuC (ID:STM14_2301)
Zinc ABC transporter, permease protein ZnuB (ID:STM14_2302)
Zinc ABC transporter, substrate-binding protein ZnuA (ID:STM14_2300)
Non-ribosomal peptide synthetase (NRPS)
Other secondary metabolites
Siderophore
Type-I polyketide synthetase (PKS)
MATLAB species model file: msp_0005.mat