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Klebsiella quasipneumoniae

Taxonomy

Image of organism in genus Klebsiella quasipneumoniae
Species:Klebsiella quasipneumoniae
Genus:Klebsiella
Family:Enterobacteriaceae
Order:Enterobacterales
Class:Gammaproteobacteria
Phylum:Proteobacteria

 

Region Enrichment:Non-westernized
(Fiji, India, Peru, Thailand)

Phenotypes

Gram stainingGram-
EcosystemHuman; Terrestrial; Mammals
Ecosystem TypeSoil; Excretory system; Respiratory system; Circulatory system

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00010 - Glycolysis / Gluconeogenesis

ko00020 - Citrate cycle (TCA cycle)

ko00030 - Pentose phosphate pathway

ko00040 - Pentose and glucuronate interconversions

ko00051 - Fructose and mannose metabolism

ko00052 - Galactose metabolism

ko00053 - Ascorbate and aldarate metabolism

ko00061 - Fatty acid biosynthesis

ko00071 - Fatty acid degradation

ko00072 - Synthesis and degradation of ketone bodies

ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis

ko00250 - Alanine, aspartate and glutamate metabolism

ko00260 - Glycine, serine and threonine metabolism

ko00270 - Cysteine and methionine metabolism

ko00281 - Geraniol degradation

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00360 - Phenylalanine metabolism

ko00362 - Benzoate degradation

ko00364 - Fluorobenzoate degradation

ko00410 - beta-Alanine metabolism

ko00440 - Phosphonate and phosphinate metabolism

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00480 - Glutathione metabolism

ko00500 - Starch and sucrose metabolism

ko00521 - Streptomycin biosynthesis

ko00540 - Lipopolysaccharide biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00620 - Pyruvate metabolism

ko00622 - Xylene degradation

ko00630 - Glyoxylate and dicarboxylate metabolism

ko00640 - Propanoate metabolism

ko00650 - Butanoate metabolism

ko00660 - C5-Branched dibasic acid metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00740 - Riboflavin metabolism

ko00750 - Vitamin B6 metabolism

ko00760 - Nicotinate and nicotinamide metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00780 - Biotin metabolism

ko00785 - Lipoic acid metabolism

ko00790 - Folate biosynthesis

ko00791 - Atrazine degradation

ko00860 - Porphyrin and chlorophyll metabolism

ko00903 - Limonene and pinene degradation

ko00910 - Nitrogen metabolism

ko00920 - Sulfur metabolism

ko00930 - Caprolactam degradation

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko01053 - Biosynthesis of siderophore group nonribosomal peptides

ko02010 - ABC transporters

ko02020 - Two-component system

ko02030 - Bacterial chemotaxis

ko02060 - Phosphotransferase system (PTS)

ko03060 - Protein export

ko03070 - Bacterial secretion system

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

ko05111 - Biofilm formation - Vibrio cholerae

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KEGG modules

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00012 - Glyoxylate cycle

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00017 - Methionine biosynthesis, apartate => homoserine => methionine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00035 - Methionine degradation

M00045 - Histidine degradation, histidine => N-formiminoglutamate => glutamate

M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A

M00061 - D-Glucuronate degradation

M00063 - CMP-KDO biosynthesis

M00064 - ADP-L-glycero-D-manno-heptose biosynthesis

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00115 - NAD biosynthesis, aspartate => NAD

M00116 - Menaquinone biosynthesis, chorismate => menaquinol

M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone

M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate

M00121 - Heme biosynthesis, glutamate => heme

M00122 - Cobalamin biosynthesis, cobinamide => cobalamin

M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin

M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00133 - Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine

M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine

M00136 - GABA biosynthesis, prokaryotes, putrescine => GABA

M00150 - Fumarate reductase, prokaryotes

M00153 - Cytochrome bd ubiquinol oxidase

M00338 - Cysteine biosynthesis, homocysteine + serine => cysteine

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00530 - Dissimilatory nitrate reduction, nitrate => ammonia

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00545 - Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA

M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P

M00551 - Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00555 - Betaine biosynthesis, choline => betaine

M00568 - Catechol ortho-cleavage, catechol => 3-oxoadipate

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP

M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin

M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00631 - D-Galacturonate degradation (bacteria)

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00642 - Multidrug resistance, efflux pump MexJK-OprM

M00696 - Multidrug resistance, efflux pump AcrEF-TolC

M00697 - Multidrug resistance, efflux pump MdtEF-TolC

M00702 - Multidrug resistance, efflux pump NorB

M00714 - Multidrug resistance, efflux pump QacA

M00718 - Multidrug resistance, efflux pump MexAB-OprM

M00745 - Imipenem resistance, repression of porin OprD

M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N

M00793 - dTDP-L-rhamnose biosynthesis

M00844 - Arginine biosynthesis, ornithine => arginine

M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine

M00846 - Siroheme biosynthesis, glutamate => siroheme

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Antibiotic resistance

aac6

fos

sul

tetX

van

Virulence factor class

Actin-based motility

Adherence

Adhesion

Biofilm

Cell motility

Cell surface and membrane proteins

Cell-to-cell spread

Cellular metabolism

Chaperone

Drug efflux system

Intracellular survival and replication

Invasion

Modulate host immune response

Protease

Regulation of gene expression

Two-component system

Virulence

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Virulence factor gene

3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (ID:S0967)

3'-to-5' exoribonuclease RNase R (ID:S4602)

Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ID:STM14_4260)

ATP-dependent helicase HrpA (ID:Z2313)

BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)

Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ID:Z4283)

Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)

Carbon starvation protein A (ID:SL1344_0588)

CFA/I fimbrial major subunit (ID:Z0360)

Chorismate synthase (EC 4.2.3.5) (ID:t0480)

D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (ID:Z4251)

D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)

Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)

Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) (ID:c1081)

Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) @ Dipeptide chemoreceptor (ID:c4361)

DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)

DNA-binding transcriptional dual regulator SoxS (ID:STM14_5127)

FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)

FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) (ID:STM3453)

GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) (ID:S2725)

Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)

Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)

Lipid A phosphoethanolamine transferase EptA/PmrC (EC 2.7.8.43) (ID:SL1344_4230)

Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)

Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)

Monothiol glutaredoxin GrxD (ID:E2348C_1740)

Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)

Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)

N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)

Na+/H+-dicarboxylate symporter (ID:Z4942)

NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (ID:STM2323.S)

Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)

Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) (ID:SL1344_3870)

Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)

Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)

Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)

Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (ID:STM14_5016)

Probable metabolite transport protein (ID:SL1344_0513)

Respiratory nitrate reductase alpha chain (EC 1.7.99.4) (ID:b1224)

RNA polymerase sigma factor RpoS (ID:SEN2763)

Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)

Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)

Superoxide dismutase [Fe] (EC 1.15.1.1) (ID:SFV_1678)

TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)

Translation initiation factor SUI1-related protein (ID:SL1344_1638)

Trk potassium uptake system protein TrkA (ID:Z4660)

Type 1 fimbriae regulatory protein FimB (ID:c5391)

Type 1 fimbriae regulatory protein FimE (ID:c5392)

Type IV pilin PilA (ID:Z0118)

Type-1 fimbrial protein, A chain (ID:Z5912)

Uncharacterized protease YegQ (ID:SL1344_2112)

Uncharacterized protein YjaG (ID:SL1344_4108)

Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) (ID:S3902)

Ureidoglycolate dehydrogenase (EC 1.1.1.154) (ID:SL1344_0521)

UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)

Zinc ABC transporter, ATP-binding protein ZnuC (ID:STM14_2301)

Zinc ABC transporter, permease protein ZnuB (ID:STM14_2302)

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Secondary metabolite

Aryl Polyene

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