Species: | Desulfovibrio fairfieldensis |
---|---|
Genus: | Desulfovibrio |
Family: | Desulfovibrionaceae |
Order: | Desulfovibrionales |
Class: | Deltaproteobacteria |
Phylum: | Proteobacteria |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00020 - Citrate cycle (TCA cycle)
ko00061 - Fatty acid biosynthesis
ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis
ko00240 - Pyrimidine metabolism
ko00250 - Alanine, aspartate and glutamate metabolism
ko00260 - Glycine, serine and threonine metabolism
ko00270 - Cysteine and methionine metabolism
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00430 - Taurine and hypotaurine metabolism
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00520 - Amino sugar and nucleotide sugar metabolism
ko00521 - Streptomycin biosynthesis
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00620 - Pyruvate metabolism
ko00630 - Glyoxylate and dicarboxylate metabolism
ko00633 - Nitrotoluene degradation
ko00660 - C5-Branched dibasic acid metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00720 - Carbon fixation pathways in prokaryotes
ko00730 - Thiamine metabolism
ko00740 - Riboflavin metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00900 - Terpenoid backbone biosynthesis
ko00910 - Nitrogen metabolism
ko00920 - Sulfur metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko03010 - Ribosome
ko03030 - DNA replication
ko03060 - Protein export
ko03070 - Bacterial secretion system
ko03410 - Base excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
M00002 - Glycolysis, core module involving three-carbon compounds
M00003 - Gluconeogenesis, oxaloacetate => fructose-6P
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00021 - Cysteine biosynthesis, serine => cysteine
M00026 - Histidine biosynthesis, PRPP => histidine
M00049 - Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00086 - beta-Oxidation, acyl-CoA synthesis
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00115 - NAD biosynthesis, aspartate => NAD
M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00121 - Heme biosynthesis, glutamate => heme
M00122 - Cobalamin biosynthesis, cobinamide => cobalamin
M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P
M00133 - Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00140 - C1-unit interconversion, prokaryotes
M00149 - Succinate dehydrogenase, prokaryotes
M00150 - Fumarate reductase, prokaryotes
M00153 - Cytochrome bd ubiquinol oxidase
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00346 - Formaldehyde assimilation, serine pathway
M00364 - C10-C20 isoprenoid biosynthesis, bacteria
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00530 - Dissimilatory nitrate reduction, nitrate => ammonia
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00596 - Dissimilatory sulfate reduction, sulfate => H2S
M00705 - Multidrug resistance, efflux pump MepA
M00718 - Multidrug resistance, efflux pump MexAB-OprM
M00793 - dTDP-L-rhamnose biosynthesis
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
M00854 - Glycogen biosynthesis, glucose-1P => glycogen/starch
Undetected
Undetected
Undetected
Non-ribosomal peptide synthetase (NRPS)
Other secondary metabolites
Type-I polyketide synthetase (PKS)
MATLAB species model file: msp_0295.mat