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unclassified Christensenellaceae-Catabacteriaceae

Taxonomy

Species:unclassified Christensenellaceae-Catabacteriaceae
Genus:unclassified Christensenellaceae-Catabacteriaceae
Family:Christensenellaceae-Catabacteriaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Region Enrichment:Non-westernized
(Fiji, Madagascar, Mongolia, Peru, United Republic of Tanzania)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Peru (36 samples)Mongolia (110 samples)United Kingdom (259 samples)Italy (63 samples)Sweden (56 samples)United Republic of Tanzania (27 samples)Austria (63 samples)Fiji (193 samples)Germany (88 samples)India (110 samples)Denmark (114 samples)France (61 samples)Madagascar (112 samples)United States of America (629 samples)Thailand (15 samples)Spain (14 samples)China (730 samples)Japan (146 samples)Luxembourg (52 samples)Finland (4 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Parkinson's disease (hgma08, 31 samples)Colon adenoma (hgma400, 47 samples)CRC (hgma44, 22 samples)CRC (hgma414, 30 samples)Chronic fatigue syndrome (hgma34, 50 samples)IGT (hgma14, 49 samples)CRC (hgma412, 46 samples)CRC (hgma415, 38 samples)Renal cancer (hgma41, 101 samples)Atherosclerosis (hgma01, 12 samples)Obesity (hgma25, 164 samples)CRC (hgma46, 61 samples)T2D (hgma403, 53 samples)Colon adenoma (hgma401, 42 samples)CRC (hgma399, 53 samples)GDM (hgma12, 18 samples)NAFLD (hgma40, 73 samples)Lung cancer (hgma26, 118 samples)CRC (hgma11, 52 samples)T2D (hgma53, 131 samples)T1D (hgma35, 42 samples)T2D (hgma02, 183 samples)CRC (hgma413, 74 samples)Cvd (hgma10, 214 samples)Colon adenoma (hgma407, 40 samples)Ulcerative colitis (hgma404, 21 samples)Melanoma (hgma03, 44 samples)Colon adenoma (hgma408, 27 samples)T2D (hgma406, 5 samples)NAFLD (hgma07, 86 samples)VKH (hgma409, 83 samples)Behcet's disease (hgma52, 24 samples)Liver cirrhosis (hgma300, 90 samples)CRC (hgma45, 158 samples)SPA (hgma09, 97 samples)Liver cirrhosis (hgma20, 123 samples)Acute diarrhea (hgma48, 10 samples)Crohn's disease (hgma06, 67 samples)Crohn's disease (hgma17, 4 samples)Rheumatoid arthritis (hgma31, 135 samples)T1D (hgma21, 4 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00300 - Lysine biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00511 - Other glycan degradation

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00710 - Carbon fixation in photosynthetic organisms

ko00780 - Biotin metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

Show all

KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00021 - Cysteine biosynthesis, serine => cysteine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00140 - C1-unit interconversion, prokaryotes

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00627 - beta-Lactam resistance, Bla system

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

Show all

Antibiotic resistance

Undetected

Virulence factor class

Undetected

Show all

Virulence factor gene

Undetected

Show all

Secondary metabolite

Undetected

Show all

Downloads

MATLAB species model file: msp_0298.mat