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Firmicutes bacterium CAG:176

Taxonomy

Species:Firmicutes bacterium CAG:176
Genus:unclassified Oscillospiraceae
Family:Oscillospiraceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Region Enrichment:Mongolia, Peru

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00240 - Pyrimidine metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00270 - Cysteine and methionine metabolism

ko00300 - Lysine biosynthesis

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00015 - Proline biosynthesis, glutamate => proline

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00122 - Cobalamin biosynthesis, cobinamide => cobalamin

M00140 - C1-unit interconversion, prokaryotes

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00159 - V-type ATPase, prokaryotes

M00627 - beta-Lactam resistance, Bla system

M00705 - Multidrug resistance, efflux pump MepA

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Antibiotic resistance

dfrA

erm

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Other secondary metabolites

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Downloads

MATLAB species model file: msp_0306.mat