GEOGRAPHY SPECIES DISEASES ABOUT DOWNLOADS

[Clostridium] asparagiforme == lavalense

Taxonomy

Species:[Clostridium] asparagiforme == lavalense
Genus:Lachnoclostridium
Family:Lachnospiraceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Gut outflow:0.435
Disease Association:

Chronic fatigue syndrome (ES=1)

Colorectal cancer (ES=1)

Healthy (ES=0.325763)

Lung cancer (ES=0.387813)

Renal cancer (ES=0.432686)

Region Enrichment:Japan

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00010 - Glycolysis / Gluconeogenesis

ko00030 - Pentose phosphate pathway

ko00040 - Pentose and glucuronate interconversions

ko00052 - Galactose metabolism

ko00072 - Synthesis and degradation of ketone bodies

ko00250 - Alanine, aspartate and glutamate metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00450 - Selenocompound metabolism

ko00473 - D-Alanine metabolism

ko00500 - Starch and sucrose metabolism

ko00511 - Other glycan degradation

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00710 - Carbon fixation in photosynthetic organisms

ko00970 - Aminoacyl-tRNA biosynthesis

ko02060 - Phosphotransferase system (PTS)

ko03410 - Base excision repair

ko03430 - Mismatch repair

Show all

KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00061 - D-Glucuronate degradation

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00159 - V-type ATPase, prokaryotes

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P

M00552 - D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00631 - D-Galacturonate degradation (bacteria)

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

M00844 - Arginine biosynthesis, ornithine => arginine

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Antibiotic resistance

tetM

Virulence factor class

Undetected

Show all

Virulence factor gene

Undetected

Show all

Secondary metabolite

Undetected

Show all

Downloads

MATLAB species model file: msp_0360.mat