| Species: | Escherichia fergusonii |
|---|---|
| Genus: | Escherichia |
| Family: | Enterobacteriaceae |
| Order: | Enterobacterales |
| Class: | Gammaproteobacteria |
| Phylum: | Proteobacteria |
| Region Enrichment: | Madagascar, Thailand |
|---|
| Shape | Rod-shaped |
|---|---|
| Gram staining | Gram- |
| Motility | Motile |
| Oxygen Requirement | Facultative |
| Sporulation | Nonsporulating |
| Ecosystem | Human; Birds; Mammals |
| Ecosystem Type | Unclassified |
In the linked pathways:
red=enriched, blue=depleted
ko00051 - Fructose and mannose metabolism
ko00061 - Fatty acid biosynthesis
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00362 - Benzoate degradation
ko00364 - Fluorobenzoate degradation
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00521 - Streptomycin biosynthesis
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00620 - Pyruvate metabolism
ko00640 - Propanoate metabolism
ko00710 - Carbon fixation in photosynthetic organisms
ko00750 - Vitamin B6 metabolism
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko02060 - Phosphotransferase system (PTS)
ko03070 - Bacterial secretion system
ko03430 - Mismatch repair
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00018 - Threonine biosynthesis, aspartate => homoserine => threonine
M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00061 - D-Glucuronate degradation
M00063 - CMP-KDO biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00115 - NAD biosynthesis, aspartate => NAD
M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00153 - Cytochrome bd ubiquinol oxidase
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00551 - Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol
M00568 - Catechol ortho-cleavage, catechol => 3-oxoadipate
M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
M00696 - Multidrug resistance, efflux pump AcrEF-TolC
M00697 - Multidrug resistance, efflux pump MdtEF-TolC
M00740 - Methylaspartate cycle
M00746 - Multidrug resistance, repression of porin OmpF
M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N
M00793 - dTDP-L-rhamnose biosynthesis
Undetected
Actin-based motility
Adhesion
Biofilm
Cell motility
Cell surface and membrane proteins
Cell-to-cell spread
Cellular metabolism
Chaperone
Defense against host immune response
Drug efflux system
Fimbriae
Intracellular survival and replication
Invasion
Iron uptake
Lps (lipopolysaccharide)
Modulate host immune response
Protease
Quorum sensing system
Regulation of gene expression
Two-component system
Virulence
Zinc uptake
16 kDa heat shock protein B (ID:c4606)
3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase (EC 2.3.1.245) (ID:SL1344_4027)
3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (ID:S0967)
ABC transporter ATP-binding protein YddA (ID:Z2212)
Arylsulfatase (EC 3.1.6.1) (ID:c4719)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ID:STM14_4260)
BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)
Chorismate synthase (EC 4.2.3.5) (ID:t0480)
Curli production assembly/transport component CsgE (ID:STM1141)
Curli production assembly/transport component CsgF (ID:SL1344_1077)
Curli production assembly/transport component CsgG (ID:STM14_1303)
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)
DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)
DNA-binding transcriptional dual regulator SoxS (ID:STM14_5127)
DTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) (ID:STM14_2590)
DTDP-glucose 4,6-dehydratase (EC 4.2.1.46) (ID:STM14_2591)
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (ID:Z4136)
Exonuclease SbcD (ID:STM474_0413)
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) (ID:STM3453)
Flagellin FliC (ID:SEN1049)
Formate efflux transporter FocA (ID:SL1344_0911)
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (ID:SL1344_2072)
GTP-binding and nucleic acid-binding protein YchF (ID:c1661)
Hha toxicity modulator TomB (ID:STM474_0494)
HtrA protease/chaperone protein (ID:SF660363_0094)
Lipid A biosynthesis myristoyltransferase (EC 2.3.1.243) (ID:SFK218_2097)
Lipid A phosphoethanolamine transferase EptA/PmrC (EC 2.7.8.43) (ID:SL1344_4230)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)
Minor curlin subunit CsgB, nucleation component of curlin monomers (ID:SL1344_1080)
Monothiol glutaredoxin GrxD (ID:E2348C_1740)
Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)
Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)
N-(3-oxohexanoyl)-L-homoserine lactone-binding transcriptional activator @ N-(3-oxooctanoyl)-L-homoserine lactone-binding transcriptional activator (ID:Z3004)
N-methyl-L-tryptophan oxidase, SolA (ID:SL1344_1097)
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)
Outer membrane porin OmpC (ID:SF2299)
Outer membrane porin OmpD (ID:SL1344_1503)
Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)
Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)
Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor (ID:SF2457T_4958)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)
Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue (ID:c4914)
Probable endopeptidase NlpC (ID:SL1344_1277)
Protein MtfA (ID:STM474_2081)
PTS system, galactitol-specific IIC component (ID:b2092)
PTS system, N,N'-diacetylchitobiose-specific IIB component (EC 2.7.1.196) (ID:SL1344_1247)
SbmA protein (ID:c0482)
Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)
Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)
Stringent starvation protein A (ID:STM14_4033)
Superoxide dismutase [Fe] (EC 1.15.1.1) (ID:SFV_1678)
TonB-ExbBD energy transducing system, TonB subunit (ID:Sd1012_3335)
Transcriptional regulatory protein PhoP (ID:SF1149)
Translation initiation factor SUI1-related protein (ID:SL1344_1638)
Type IV pilin PilA (ID:Z0118)
UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (ID:SL1344_2057)
Uncharacterized N-acetyltransferase YedL (ID:Z3022)
Uncharacterized protein clustered with Type I restriction-modification system (ID:SL1344_3720)
Uncharacterized protein YaiT (ID:Z0469)
Universal stress protein F (ID:STM474_1664)
UPF0118 inner membrane protein YdiK (ID:SL1344_1298)
UPF0187 protein YneE (ID:STM474_1538)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:SL1344_2075)
Zinc ABC transporter, ATP-binding protein ZnuC (ID:STM14_2301)
Zinc ABC transporter, substrate-binding protein ZnuA (ID:STM14_2300)
Aryl Polyene
