| Species: | Citrobacter portucalensis |
|---|---|
| Genus: | Citrobacter |
| Family: | Enterobacteriaceae |
| Order: | Enterobacterales |
| Class: | Gammaproteobacteria |
| Phylum: | Proteobacteria |
| Gut outflow: | 0.667 |
|---|---|
| Disease Association: |
Colorectal cancer (ES=0.30311) |
| Region Enrichment: | Thailand |
| Shape | Rod-shaped |
|---|---|
| Gram staining | Gram- |
| Motility | Motile |
| Oxygen Requirement | Facultative |
| Ecosystem | Human |
| Ecosystem Type | Unclassified; Excretory system |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00020 - Citrate cycle (TCA cycle)
ko00030 - Pentose phosphate pathway
ko00040 - Pentose and glucuronate interconversions
ko00051 - Fructose and mannose metabolism
ko00052 - Galactose metabolism
ko00053 - Ascorbate and aldarate metabolism
ko00061 - Fatty acid biosynthesis
ko00071 - Fatty acid degradation
ko00072 - Synthesis and degradation of ketone bodies
ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis
ko00230 - Purine metabolism
ko00240 - Pyrimidine metabolism
ko00250 - Alanine, aspartate and glutamate metabolism
ko00260 - Glycine, serine and threonine metabolism
ko00270 - Cysteine and methionine metabolism
ko00281 - Geraniol degradation
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00330 - Arginine and proline metabolism
ko00340 - Histidine metabolism
ko00360 - Phenylalanine metabolism
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00410 - beta-Alanine metabolism
ko00450 - Selenocompound metabolism
ko00460 - Cyanoamino acid metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00480 - Glutathione metabolism
ko00500 - Starch and sucrose metabolism
ko00511 - Other glycan degradation
ko00520 - Amino sugar and nucleotide sugar metabolism
ko00521 - Streptomycin biosynthesis
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00561 - Glycerolipid metabolism
ko00564 - Glycerophospholipid metabolism
ko00620 - Pyruvate metabolism
ko00630 - Glyoxylate and dicarboxylate metabolism
ko00633 - Nitrotoluene degradation
ko00640 - Propanoate metabolism
ko00650 - Butanoate metabolism
ko00660 - C5-Branched dibasic acid metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00720 - Carbon fixation pathways in prokaryotes
ko00730 - Thiamine metabolism
ko00740 - Riboflavin metabolism
ko00750 - Vitamin B6 metabolism
ko00760 - Nicotinate and nicotinamide metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00790 - Folate biosynthesis
ko00791 - Atrazine degradation
ko00860 - Porphyrin and chlorophyll metabolism
ko00900 - Terpenoid backbone biosynthesis
ko00903 - Limonene and pinene degradation
ko00910 - Nitrogen metabolism
ko00920 - Sulfur metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko00983 - Drug metabolism - other enzymes
ko01040 - Biosynthesis of unsaturated fatty acids
ko01053 - Biosynthesis of siderophore group nonribosomal peptides
ko01110 - Biosynthesis of secondary metabolites
ko01120 - Microbial metabolism in diverse environments
ko02010 - ABC transporters
ko02020 - Two-component system
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko02060 - Phosphotransferase system (PTS)
ko03018 - RNA degradation
ko03030 - DNA replication
ko03060 - Protein export
ko03410 - Base excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
ko05111 - Biofilm formation - Vibrio cholerae
M00002 - Glycolysis, core module involving three-carbon compounds
M00003 - Gluconeogenesis, oxaloacetate => fructose-6P
M00004 - Pentose phosphate pathway (Pentose phosphate cycle)
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00012 - Glyoxylate cycle
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00018 - Threonine biosynthesis, aspartate => homoserine => threonine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00021 - Cysteine biosynthesis, serine => cysteine
M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00033 - Ectoine biosynthesis, aspartate => ectoine
M00045 - Histidine degradation, histidine => N-formiminoglutamate => glutamate
M00048 - Inosine monophosphate biosynthesis, PRPP + glutamine => IMP
M00049 - Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00053 - Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP
M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A
M00061 - D-Glucuronate degradation
M00063 - CMP-KDO biosynthesis
M00064 - ADP-L-glycero-D-manno-heptose biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00115 - NAD biosynthesis, aspartate => NAD
M00116 - Menaquinone biosynthesis, chorismate => menaquinol
M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00121 - Heme biosynthesis, glutamate => heme
M00122 - Cobalamin biosynthesis, cobinamide => cobalamin
M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P
M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00136 - GABA biosynthesis, prokaryotes, putrescine => GABA
M00144 - NADH
M00149 - Succinate dehydrogenase, prokaryotes
M00150 - Fumarate reductase, prokaryotes
M00153 - Cytochrome bd ubiquinol oxidase
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00165 - Reductive pentose phosphate cycle (Calvin cycle)
M00167 - Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P
M00176 - Assimilatory sulfate reduction, sulfate => H2S
M00308 - Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
M00364 - C10-C20 isoprenoid biosynthesis, bacteria
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00417 - Cytochrome o ubiquinol oxidase
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00530 - Dissimilatory nitrate reduction, nitrate => ammonia
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00545 - Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose
M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00631 - D-Galacturonate degradation (bacteria)
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00696 - Multidrug resistance, efflux pump AcrEF-TolC
M00697 - Multidrug resistance, efflux pump MdtEF-TolC
M00714 - Multidrug resistance, efflux pump QacA
M00718 - Multidrug resistance, efflux pump MexAB-OprM
M00740 - Methylaspartate cycle
M00745 - Imipenem resistance, repression of porin OprD
M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N
M00793 - dTDP-L-rhamnose biosynthesis
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
M00846 - Siroheme biosynthesis, glutamate => siroheme
Actin-based motility
Adhesion
Biofilm
Cell motility
Cell surface and membrane proteins
Cell-to-cell spread
Cellular metabolism
Chaperone
Defense against host immune response
Drug efflux system
Fimbriae
Intracellular survival and replication
Invasion
Iron uptake
Lps (lipopolysaccharide)
Protease
Regulation of gene expression
Stress
Two-component system
Virulence
Zinc uptake
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) (ID:STM474_0645)
16 kDa heat shock protein A (ID:SL1344_3776)
16 kDa heat shock protein B (ID:c4606)
2-ketobutyrate formate-lyase (EC 2.3.1.-) @ Pyruvate formate-lyase (EC 2.3.1.54) (ID:Z4466)
3-dehydroquinate dehydratase I (EC 4.2.1.10) (ID:SEN1686)
3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (ID:S0967)
3'-to-5' exoribonuclease RNase R (ID:S4602)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) (ID:STM474_3165)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ID:STM14_4260)
ATP-dependent helicase HrpA (ID:Z2313)
Autotransporter (ID:SEN3580)
Autotransporter (ID:STM14_4527)
BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)
Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ID:Z4283)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (ID:Z0037)
Carbon starvation protein A (ID:SL1344_0588)
Chorismate synthase (EC 4.2.3.5) (ID:t0480)
Cobalamin synthase (EC 2.7.8.26) (ID:SG2041)
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11) (ID:SG2061)
Colanic acid biosynthesis protein WcaM (ID:SL1344_2076)
Curli production assembly/transport component CsgE (ID:STM1141)
Curli production assembly/transport component CsgF (ID:SL1344_1077)
Curli production assembly/transport component CsgG (ID:STM14_1303)
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) (ID:SL1344_0436)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (ID:Z4251)
D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)
D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) (ID:b3137)
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)
Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) (ID:c1081)
Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) @ Dipeptide chemoreceptor (ID:c4361)
DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)
DNA-binding transcriptional dual regulator SoxS (ID:STM14_5127)
DTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59) (ID:c4711)
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (ID:Z4136)
Exonuclease SbcD (ID:STM474_0413)
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) (ID:STM3453)
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) (ID:STM474_3621)
Formate efflux transporter FocA (ID:SL1344_0911)
Galactose/methyl galactoside ABC transporter, ATP-binding protein MglA (EC 3.6.3.17) (ID:Z3404)
Gluconokinase (EC 2.7.1.12) (ID:SL1344_4415)
GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) (ID:S2725)
GTP-binding and nucleic acid-binding protein YchF (ID:c1661)
Hha toxicity modulator TomB (ID:STM474_0494)
Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)
Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)
Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain (ID:S2726)
Lipid A biosynthesis myristoyltransferase (EC 2.3.1.243) (ID:SFK218_2097)
Lipid A phosphoethanolamine transferase EptA/PmrC (EC 2.7.8.43) (ID:SL1344_4230)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)
Maltodextrin ABC transporter, ATP-binding protein MsmX (ID:Z2463)
Manganese ABC transporter, periplasmic-binding protein SitA (ID:SL1344_2841)
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)
Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)
Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM474_0892)
Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)
N-methyl-L-tryptophan oxidase, SolA (ID:SL1344_1097)
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)
Na+/H+-dicarboxylate symporter (ID:Z4942)
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1) (ID:SL1344_2164)
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (ID:STM2323.S)
Osmolarity sensory histidine kinase EnvZ (ID:STM14_4216)
Outer membrane porin OmpC (ID:SF2299)
Outer membrane porin OmpF (ID:c1071)
Outer membrane protein A precursor (ID:b0957)
Outer membrane usher protein SfmD (ID:STM0546)
Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)
Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) (ID:SL1344_0566)
Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) (ID:SL1344_3870)
Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)
Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)
Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor (ID:SF2457T_4958)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)
Phosphate transport system regulatory protein PhoU (ID:c4648)
Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue (ID:c4914)
Phosphomannomutase (EC 5.4.2.8) => Colanic acid (ID:c2557)
Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (ID:STM14_5016)
Probable endopeptidase NlpC (ID:SL1344_1277)
Probable fimbrial chaperone SfmC (ID:t2318)
Protein MtfA (ID:STM474_2081)
PTS system, galactitol-specific IIC component (ID:b2092)
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) (ID:STM474_0956)
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) (ID:b1224)
RNA polymerase sigma factor RpoS (ID:SEN2763)
RNA polymerase-binding transcription factor DksA (ID:S0140)
SbmA protein (ID:c0482)
Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)
Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)
Spermidine export protein MdtJ (ID:SL1344_1412)
Stringent starvation protein A (ID:STM14_4033)
Thioredoxin 2 (ID:Z3867)
Threonine catabolic operon transcriptional activator TdcA (ID:SL1344_3217)
TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)
TonB-ExbBD energy transducing system, TonB subunit (ID:Sd1012_3335)
Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) (ID:STM14_0641)
Transcriptional regulatory protein PhoP (ID:SF1149)
Transketolase (EC 2.2.1.1) (ID:c3520)
Tricarboxylate transport transcriptional regulator TctD => Citrate response regulator CitB (ID:STM474_0647)
Trk potassium uptake system protein TrkA (ID:Z4660)
Tryptophan synthase beta chain (EC 4.2.1.20) (ID:Z2550)
Type IV pilin PilA (ID:Z0118)
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (ID:STM0226)
UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (ID:SL1344_2057)
Uncharacterized ferredoxin-like protein YdhY (ID:Z2702)
Uncharacterized ferredoxin-like protein YfhL (ID:SL1344_2538)
Uncharacterized fimbrial-like protein SfmF (ID:STM0548)
Uncharacterized fimbrial-like protein SfmH (ID:STM0547)
Uncharacterized HTH-type transcriptional regulator YfhH (ID:Z3841)
Uncharacterized protease YegQ (ID:SL1344_2112)
Uncharacterized protein YaiT (ID:Z0469)
Uncharacterized protein YjaG (ID:SL1344_4108)
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) (ID:S3902)
Universal stress protein F (ID:STM474_1664)
UPF0118 inner membrane protein YdiK (ID:SL1344_1298)
UPF0187 protein YneE (ID:STM474_1538)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:SL1344_2075)
Zinc ABC transporter, ATP-binding protein ZnuC (ID:STM14_2301)
Zinc ABC transporter, permease protein ZnuB (ID:STM14_2302)
Zinc ABC transporter, substrate-binding protein ZnuA (ID:STM14_2300)
Non-ribosomal peptide synthetase (NRPS)
MATLAB species model file: msp_0626.mat
