| Species: | [Clostridium] citroniae |
|---|---|
| Genus: | Lachnoclostridium |
| Family: | Lachnospiraceae |
| Order: | Clostridiales |
| Class: | Clostridia |
| Phylum: | Firmicutes |
| Gut outflow: | 0.516 |
|---|---|
| Disease Association: |
Crohn's disease (ES=0.458365) Liver cirrhosis (ES=0.326378) Lung cancer (ES=0.315277) Renal cancer (ES=0.373535) |
| Region Enrichment: | Italy, Japan |
| Shape | Rod-shaped |
|---|---|
| Gram staining | Gram+ |
| Motility | Motile |
| Sporulation | Sporulating |
| Ecosystem | Human |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00030 - Pentose phosphate pathway
ko00040 - Pentose and glucuronate interconversions
ko00052 - Galactose metabolism
ko00061 - Fatty acid biosynthesis
ko00250 - Alanine, aspartate and glutamate metabolism
ko00260 - Glycine, serine and threonine metabolism
ko00270 - Cysteine and methionine metabolism
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00520 - Amino sugar and nucleotide sugar metabolism
ko00521 - Streptomycin biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00620 - Pyruvate metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00730 - Thiamine metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko00983 - Drug metabolism - other enzymes
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko03430 - Mismatch repair
ko03440 - Homologous recombination
M00002 - Glycolysis, core module involving three-carbon compounds
M00003 - Gluconeogenesis, oxaloacetate => fructose-6P
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00015 - Proline biosynthesis, glutamate => proline
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00061 - D-Glucuronate degradation
M00086 - beta-Oxidation, acyl-CoA synthesis
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00140 - C1-unit interconversion, prokaryotes
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00159 - V-type ATPase, prokaryotes
M00308 - Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00552 - D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00565 - Trehalose biosynthesis, D-glucose 1P => trehalose
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00631 - D-Galacturonate degradation (bacteria)
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00705 - Multidrug resistance, efflux pump MepA
M00793 - dTDP-L-rhamnose biosynthesis
M00844 - Arginine biosynthesis, ornithine => arginine
Undetected
Undetected
Undetected
MATLAB species model file: msp_0713.mat
