| Species: | Citrobacter werkmanii == Citrobacter freundii |
|---|---|
| Genus: | Citrobacter |
| Family: | Enterobacteriaceae |
| Order: | Enterobacterales |
| Class: | Gammaproteobacteria |
| Phylum: | Proteobacteria |
In the linked pathways:
red=enriched, blue=depleted
ko00030 - Pentose phosphate pathway
ko00040 - Pentose and glucuronate interconversions
ko00053 - Ascorbate and aldarate metabolism
ko00250 - Alanine, aspartate and glutamate metabolism
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00480 - Glutathione metabolism
ko00500 - Starch and sucrose metabolism
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00660 - C5-Branched dibasic acid metabolism
ko00710 - Carbon fixation in photosynthetic organisms
ko00750 - Vitamin B6 metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko02060 - Phosphotransferase system (PTS)
ko03410 - Base excision repair
ko03430 - Mismatch repair
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00015 - Proline biosynthesis, glutamate => proline
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A
M00061 - D-Glucuronate degradation
M00063 - CMP-KDO biosynthesis
M00064 - ADP-L-glycero-D-manno-heptose biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00115 - NAD biosynthesis, aspartate => NAD
M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00153 - Cytochrome bd ubiquinol oxidase
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P
M00552 - D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
M00631 - D-Galacturonate degradation (bacteria)
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00696 - Multidrug resistance, efflux pump AcrEF-TolC
M00697 - Multidrug resistance, efflux pump MdtEF-TolC
M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N
M00793 - dTDP-L-rhamnose biosynthesis
M00843 - L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Adhesion
Bile resistance
Biofilm
Cell motility
Cell surface and membrane proteins
Cell-to-cell spread
Cellular metabolism
Chaperone
Fimbriae
Intracellular survival and replication
Invasion
Regulation of gene expression
Virulence
3-dehydroquinate dehydratase I (EC 4.2.1.10) (ID:SEN1686)
3'-to-5' exoribonuclease RNase R (ID:S4602)
ATP-dependent helicase HrpA (ID:Z2313)
Autotransporter (ID:SEN3580)
Autotransporter (ID:STM14_4527)
C-di-GMP phosphodiesterase (EC 3.1.4.52) => PdeF (ID:STM474_2606)
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11) (ID:SG2061)
Colanic acid biosynthesis protein WcaM (ID:SL1344_2076)
Curli production assembly/transport component CsgG (ID:STM14_1303)
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)
DTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59) (ID:c4711)
Exonuclease SbcD (ID:STM474_0413)
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)
FIG031703: Fimbriae usher protein StbC (ID:STM474_0353)
Galactose/methyl galactoside ABC transporter, ATP-binding protein MglA (EC 3.6.3.17) (ID:Z3404)
GTP-binding and nucleic acid-binding protein YchF (ID:c1661)
Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)
HtrA protease/chaperone protein (ID:SF285071_0233)
Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)
Minor curlin subunit CsgB, nucleation component of curlin monomers (ID:SL1344_1080)
Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM474_0892)
Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)
N-methyl-L-tryptophan oxidase, SolA (ID:SL1344_1097)
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1) (ID:SL1344_2164)
Outer membrane usher protein SfmD (ID:STM0546)
Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)
Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)
Phosphate transport system regulatory protein PhoU (ID:c4648)
Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue (ID:c4914)
Probable endopeptidase NlpC (ID:SL1344_1277)
Protein MtfA (ID:STM474_2081)
SbmA protein (ID:c0482)
Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)
Stress response diiron-containing protein YciF (ID:STM474_1746)
TolA protein (ID:SL1344_0729)
TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)
Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) (ID:STM14_0641)
Transcriptional regulator, GntR family (ID:STM474_3770)
Transketolase (EC 2.2.1.1) (ID:c3520)
Translation initiation factor SUI1-related protein (ID:SL1344_1638)
Trk potassium uptake system protein TrkA (ID:Z4660)
Type IV pilin PilA (ID:Z0118)
UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (ID:SL1344_2057)
Uncharacterized ferredoxin-like protein YfhL (ID:SL1344_2538)
Uncharacterized fimbrial-like protein SfmH (ID:STM0547)
Uncharacterized HTH-type transcriptional regulator YfhH (ID:Z3841)
Uncharacterized protein YjaG (ID:SL1344_4108)
UPF0187 protein YneE (ID:STM474_1538)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)
Undetected
