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Enterobacter kobei

Taxonomy

Image of organism in genus Enterobacter kobei
Species:Enterobacter kobei
Genus:Enterobacter
Family:Enterobacteriaceae
Order:Enterobacterales
Class:Gammaproteobacteria
Phylum:Proteobacteria

 

Gut outflow:1
Region Enrichment:Fiji, Thailand

Phenotypes

ShapeRod-shaped
Gram stainingGram-
MotilityMotile
Oxygen RequirementFacultative
SporulationSporulating
EcosystemHuman
Ecosystem TypeCirculatory system; Respiratory system; Excretory system

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00010 - Glycolysis / Gluconeogenesis

ko00030 - Pentose phosphate pathway

ko00040 - Pentose and glucuronate interconversions

ko00051 - Fructose and mannose metabolism

ko00052 - Galactose metabolism

ko00053 - Ascorbate and aldarate metabolism

ko00061 - Fatty acid biosynthesis

ko00072 - Synthesis and degradation of ketone bodies

ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis

ko00230 - Purine metabolism

ko00240 - Pyrimidine metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00260 - Glycine, serine and threonine metabolism

ko00270 - Cysteine and methionine metabolism

ko00281 - Geraniol degradation

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00330 - Arginine and proline metabolism

ko00410 - beta-Alanine metabolism

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00480 - Glutathione metabolism

ko00500 - Starch and sucrose metabolism

ko00520 - Amino sugar and nucleotide sugar metabolism

ko00521 - Streptomycin biosynthesis

ko00540 - Lipopolysaccharide biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00620 - Pyruvate metabolism

ko00650 - Butanoate metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00740 - Riboflavin metabolism

ko00750 - Vitamin B6 metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00780 - Biotin metabolism

ko00785 - Lipoic acid metabolism

ko00790 - Folate biosynthesis

ko00791 - Atrazine degradation

ko00910 - Nitrogen metabolism

ko00920 - Sulfur metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko02010 - ABC transporters

ko02020 - Two-component system

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko02060 - Phosphotransferase system (PTS)

ko03030 - DNA replication

ko03070 - Bacterial secretion system

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00017 - Methionine biosynthesis, apartate => homoserine => methionine

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00048 - Inosine monophosphate biosynthesis, PRPP + glutamine => IMP

M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A

M00061 - D-Glucuronate degradation

M00063 - CMP-KDO biosynthesis

M00064 - ADP-L-glycero-D-manno-heptose biosynthesis

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone

M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate

M00121 - Heme biosynthesis, glutamate => heme

M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00133 - Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine

M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine

M00136 - GABA biosynthesis, prokaryotes, putrescine => GABA

M00150 - Fumarate reductase, prokaryotes

M00153 - Cytochrome bd ubiquinol oxidase

M00176 - Assimilatory sulfate reduction, sulfate => H2S

M00364 - C10-C20 isoprenoid biosynthesis, bacteria

M00365 - C10-C20 isoprenoid biosynthesis, archaea

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00533 - Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P

M00552 - D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00565 - Trehalose biosynthesis, D-glucose 1P => trehalose

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP

M00631 - D-Galacturonate degradation (bacteria)

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00642 - Multidrug resistance, efflux pump MexJK-OprM

M00649 - Multidrug resistance, efflux pump AdeABC

M00696 - Multidrug resistance, efflux pump AcrEF-TolC

M00704 - Tetracycline resistance, efflux pump Tet38

M00714 - Multidrug resistance, efflux pump QacA

M00718 - Multidrug resistance, efflux pump MexAB-OprM

M00745 - Imipenem resistance, repression of porin OprD

M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N

M00844 - Arginine biosynthesis, ornithine => arginine

M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine

M00846 - Siroheme biosynthesis, glutamate => siroheme

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Antibiotic resistance

erm

fos

tetM

Virulence factor class

Adhesion

Biofilm

Cell surface and membrane proteins

Cell-to-cell spread

Chaperone

Defense against host immune response

Drug efflux system

Fimbriae

Intracellular survival and replication

Invasion

Regulation of gene expression

Two-component system

Virulence

Zinc uptake

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Virulence factor gene

16 kDa heat shock protein B (ID:c4606)

2-ketobutyrate formate-lyase (EC 2.3.1.-) @ Pyruvate formate-lyase (EC 2.3.1.54) (ID:Z4466)

3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase (EC 2.3.1.245) (ID:SL1344_4027)

3'-to-5' exoribonuclease RNase R (ID:S4602)

4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) (ID:STM474_3165)

ATP-dependent helicase HrpA (ID:Z2313)

BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)

Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ID:Z4283)

Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)

Carbon starvation protein A (ID:SL1344_0588)

Colanic acid biosynthesis glycosyl transferase WcaE (ID:STM474_2196)

Curli production assembly/transport component CsgE (ID:STM1141)

Curli production assembly/transport component CsgF (ID:SL1344_1077)

Curli production assembly/transport component CsgG (ID:STM14_1303)

D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (ID:Z4251)

D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)

Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)

DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)

DTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59) (ID:c4711)

FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)

FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) (ID:STM3453)

Galactose/methyl galactoside ABC transporter, ATP-binding protein MglA (EC 3.6.3.17) (ID:Z3404)

GDP-L-fucose synthetase (EC 1.1.1.271) (ID:Z3197)

Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)

Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)

HtrA protease/chaperone protein (ID:SF660363_0094)

Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)

Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain (ID:STM2511)

Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)

Maltodextrin ABC transporter, ATP-binding protein MsmX (ID:Z2463)

Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)

Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)

N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)

Na+/H+-dicarboxylate symporter (ID:Z4942)

NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (ID:STM2323.S)

Osmolarity sensory histidine kinase EnvZ (ID:STM14_4216)

Outer membrane porin OmpD (ID:SL1344_1503)

Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)

Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) (ID:SL1344_3870)

Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)

Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)

Phosphate transport system regulatory protein PhoU (ID:c4648)

Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (ID:STM14_5016)

Probable endopeptidase NlpC (ID:SL1344_1277)

Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) (ID:STM474_0956)

Respiratory nitrate reductase alpha chain (EC 1.7.99.4) (ID:b1224)

SbmA protein (ID:c0482)

Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)

Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)

Spermidine export protein MdtJ (ID:SL1344_1412)

Threonine catabolic operon transcriptional activator TdcA (ID:SL1344_3217)

TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)

Transcriptional regulatory protein PhoP (ID:SF1149)

Transketolase (EC 2.2.1.1) (ID:c3520)

Trk potassium uptake system protein TrkA (ID:Z4660)

UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (ID:STM0226)

UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (ID:SL1344_2057)

Uncharacterized protease YegQ (ID:SL1344_2112)

Uncharacterized protein YjaG (ID:SL1344_4108)

UPF0187 protein YneE (ID:STM474_1538)

UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)

UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:SL1344_2075)

Zinc ABC transporter, substrate-binding protein ZnuA (ID:STM14_2300)

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Secondary metabolite

Undetected

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