| Species: | Haemophilus parainfluenzae |
|---|---|
| Genus: | Haemophilus |
| Family: | Pasteurellaceae |
| Order: | Pasteurellales |
| Class: | Gammaproteobacteria |
| Phylum: | Proteobacteria |
| Gut outflow: | 0.524 |
|---|---|
| Disease Association: |
Healthy (ES=0.385532) Liver cirrhosis (ES=1) Type 1 diabetes (ES=0.359363) |
| Region Enrichment: | Mixed (Japan, Madagascar, Thailand) |
| Shape | Rod-shaped |
|---|---|
| Gram staining | Gram- |
| Motility | Nonmotile |
| Oxygen Requirement | Facultative |
| Ecosystem | Human |
| Ecosystem Type | Unclassified; Skin; Reproductive system; Respiratory system; Excretory system; Circulatory system |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00020 - Citrate cycle (TCA cycle)
ko00061 - Fatty acid biosynthesis
ko00240 - Pyrimidine metabolism
ko00270 - Cysteine and methionine metabolism
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00480 - Glutathione metabolism
ko00520 - Amino sugar and nucleotide sugar metabolism
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00620 - Pyruvate metabolism
ko00660 - C5-Branched dibasic acid metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00730 - Thiamine metabolism
ko00740 - Riboflavin metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00790 - Folate biosynthesis
ko00970 - Aminoacyl-tRNA biosynthesis
ko00983 - Drug metabolism - other enzymes
ko03010 - Ribosome
ko03030 - DNA replication
ko03060 - Protein export
ko03070 - Bacterial secretion system
ko03410 - Base excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
M00002 - Glycolysis, core module involving three-carbon compounds
M00003 - Gluconeogenesis, oxaloacetate => fructose-6P
M00004 - Pentose phosphate pathway (Pentose phosphate cycle)
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00018 - Threonine biosynthesis, aspartate => homoserine => threonine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00021 - Cysteine biosynthesis, serine => cysteine
M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00048 - Inosine monophosphate biosynthesis, PRPP + glutamine => IMP
M00049 - Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00053 - Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP
M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A
M00063 - CMP-KDO biosynthesis
M00064 - ADP-L-glycero-D-manno-heptose biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00116 - Menaquinone biosynthesis, chorismate => menaquinol
M00121 - Heme biosynthesis, glutamate => heme
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00150 - Fumarate reductase, prokaryotes
M00153 - Cytochrome bd ubiquinol oxidase
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00346 - Formaldehyde assimilation, serine pathway
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00718 - Multidrug resistance, efflux pump MexAB-OprM
M00844 - Arginine biosynthesis, ornithine => arginine
Intracellular survival and replication
Invasion
Virulence
2-ketobutyrate formate-lyase (EC 2.3.1.-) @ Pyruvate formate-lyase (EC 2.3.1.54) (ID:Z4466)
GTP-binding and nucleic acid-binding protein YchF (ID:c1661)
Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain (ID:STM2511)
Tryptophan synthase beta chain (EC 4.2.1.20) (ID:Z2550)
Uncharacterized protease YegQ (ID:SL1344_2112)
Undetected
MATLAB species model file: msp_0881.mat
