| Species: | Ruminococcaceae bacterium UBA5891 |
|---|---|
| Genus: | unclassified Ruminococcaceae |
| Family: | Ruminococcaceae |
| Order: | Clostridiales |
| Class: | Clostridia |
| Phylum: | Firmicutes |
| Gut outflow: | 0.316 |
|---|---|
| Region Enrichment: | Peru |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00240 - Pyrimidine metabolism
ko00250 - Alanine, aspartate and glutamate metabolism
ko00300 - Lysine biosynthesis
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00511 - Other glycan degradation
ko00550 - Peptidoglycan biosynthesis
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00970 - Aminoacyl-tRNA biosynthesis
ko03010 - Ribosome
ko03030 - DNA replication
ko03060 - Protein export
ko03410 - Base excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
M00002 - Glycolysis, core module involving three-carbon compounds
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00021 - Cysteine biosynthesis, serine => cysteine
M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00051 - Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP
M00061 - D-Glucuronate degradation
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00140 - C1-unit interconversion, prokaryotes
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00159 - V-type ATPase, prokaryotes
M00308 - Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00631 - D-Galacturonate degradation (bacteria)
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00705 - Multidrug resistance, efflux pump MepA
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Undetected
Undetected
Undetected
MATLAB species model file: msp_0904.mat
