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Proteus genomosp. 6

Taxonomy

Image of organism in genus Proteus genomosp. 6
Species:Proteus genomosp. 6
Genus:Proteus
Family:Morganellaceae
Order:Enterobacterales
Class:Gammaproteobacteria
Phylum:Proteobacteria

 

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00010 - Glycolysis / Gluconeogenesis

ko00020 - Citrate cycle (TCA cycle)

ko00250 - Alanine, aspartate and glutamate metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00620 - Pyruvate metabolism

ko00660 - C5-Branched dibasic acid metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00750 - Vitamin B6 metabolism

ko00785 - Lipoic acid metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko03060 - Protein export

ko03070 - Bacterial secretion system

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00017 - Methionine biosynthesis, apartate => homoserine => methionine

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P

M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine

M00150 - Fumarate reductase, prokaryotes

M00365 - C10-C20 isoprenoid biosynthesis, archaea

M00417 - Cytochrome o ubiquinol oxidase

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00714 - Multidrug resistance, efflux pump QacA

M00718 - Multidrug resistance, efflux pump MexAB-OprM

M00793 - dTDP-L-rhamnose biosynthesis

M00844 - Arginine biosynthesis, ornithine => arginine

M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine

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Antibiotic resistance

tetM

Virulence factor class

Cell surface and membrane proteins

Intracellular survival and replication

Mitogenic

Virulence

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Virulence factor gene

ATP-dependent helicase HrpA (ID:Z2313)

Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)

Chorismate synthase (EC 4.2.3.5) (ID:t0480)

Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) (ID:SL1344_0436)

D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)

Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) @ Dipeptide chemoreceptor (ID:c4361)

GTP-binding and nucleic acid-binding protein YchF (ID:c1661)

Heat shock protein 60 kDa family chaperone GroEL (ID:BARBAKC583_1172)

Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)

NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (ID:STM2323.S)

Phosphate transport system regulatory protein PhoU (ID:c4648)

RNA polymerase sigma factor RpoS (ID:SEN2763)

Transketolase (EC 2.2.1.1) (ID:c3520)

Trk potassium uptake system protein TrkA (ID:Z4660)

UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (ID:STM0226)

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Secondary metabolite

Undetected

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