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unclassified Candidatus Melainabacteria

Taxonomy

Species:unclassified Candidatus Melainabacteria
Genus:unclassified Candidatus Melainabacteria
Family:unclassified Candidatus Melainabacteria
Order:unclassified Candidatus Melainabacteria
Class:unclassified Candidatus Melainabacteria
Phylum:Candidatus Melainabacteria

 

Region Enrichment:Peru

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Peru (36 samples)Fiji (193 samples)Madagascar (112 samples)India (110 samples)United Republic of Tanzania (27 samples)Austria (63 samples)United States of America (629 samples)Mongolia (110 samples)China (730 samples)Denmark (114 samples)Finland (4 samples)France (61 samples)Germany (88 samples)Italy (63 samples)Japan (146 samples)Luxembourg (52 samples)Spain (14 samples)Sweden (56 samples)Thailand (15 samples)United Kingdom (259 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Obesity (hgma25, 164 samples)CRC (hgma414, 30 samples)Acute diarrhea (hgma48, 10 samples)Atherosclerosis (hgma01, 12 samples)Behcet's disease (hgma52, 24 samples)Chronic fatigue syndrome (hgma34, 50 samples)Colon adenoma (hgma400, 47 samples)Colon adenoma (hgma401, 42 samples)Colon adenoma (hgma407, 40 samples)Colon adenoma (hgma408, 27 samples)CRC (hgma11, 52 samples)CRC (hgma399, 53 samples)CRC (hgma412, 46 samples)CRC (hgma413, 74 samples)CRC (hgma415, 38 samples)CRC (hgma44, 22 samples)CRC (hgma45, 158 samples)CRC (hgma46, 61 samples)Crohn's disease (hgma06, 67 samples)Crohn's disease (hgma17, 4 samples)Cvd (hgma10, 214 samples)GDM (hgma12, 18 samples)IGT (hgma14, 49 samples)Liver cirrhosis (hgma20, 123 samples)Liver cirrhosis (hgma300, 90 samples)Lung cancer (hgma26, 118 samples)Melanoma (hgma03, 44 samples)NAFLD (hgma07, 86 samples)NAFLD (hgma40, 73 samples)Parkinson's disease (hgma08, 31 samples)Renal cancer (hgma41, 101 samples)Rheumatoid arthritis (hgma31, 135 samples)SPA (hgma09, 97 samples)T1D (hgma21, 4 samples)T1D (hgma35, 42 samples)T2D (hgma02, 183 samples)T2D (hgma403, 53 samples)T2D (hgma406, 5 samples)T2D (hgma53, 131 samples)Ulcerative colitis (hgma404, 21 samples)VKH (hgma409, 83 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00061 - Fatty acid biosynthesis

ko00300 - Lysine biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00540 - Lipopolysaccharide biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00730 - Thiamine metabolism

ko00780 - Biotin metabolism

ko00785 - Lipoic acid metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00021 - Cysteine biosynthesis, serine => cysteine

M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate

M00049 - Adenine ribonucleotide biosynthesis, IMP => ADP,ATP

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A

M00063 - CMP-KDO biosynthesis

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00115 - NAD biosynthesis, aspartate => NAD

M00144 - NADH

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00565 - Trehalose biosynthesis, D-glucose 1P => trehalose

M00718 - Multidrug resistance, efflux pump MexAB-OprM

M00793 - dTDP-L-rhamnose biosynthesis

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Antibiotic resistance

erm

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

Show all

Secondary metabolite

Undetected

Show all