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[Clostridium] sp. CAG:389

Taxonomy

Species:[Clostridium] sp. CAG:389
Genus:unclassified Clostridiales 2
Family:unclassified Clostridiales 2
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Gut outflow:0.45

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Spain (14 samples)Thailand (15 samples)Denmark (114 samples)Austria (63 samples)China (730 samples)Fiji (193 samples)Madagascar (112 samples)Luxembourg (52 samples)France (61 samples)Sweden (56 samples)United Kingdom (259 samples)United States of America (629 samples)Peru (36 samples)Germany (88 samples)Mongolia (110 samples)India (110 samples)Japan (146 samples)United Republic of Tanzania (27 samples)Italy (63 samples)Finland (4 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Ulcerative colitis (hgma404, 21 samples)IGT (hgma14, 49 samples)Cvd (hgma10, 214 samples)Atherosclerosis (hgma01, 12 samples)GDM (hgma12, 18 samples)Rheumatoid arthritis (hgma31, 135 samples)Obesity (hgma25, 164 samples)T2D (hgma02, 183 samples)Liver cirrhosis (hgma20, 123 samples)CRC (hgma399, 53 samples)T1D (hgma35, 42 samples)CRC (hgma415, 38 samples)T2D (hgma53, 131 samples)CRC (hgma413, 74 samples)SPA (hgma09, 97 samples)Colon adenoma (hgma400, 47 samples)Colon adenoma (hgma401, 42 samples)Parkinson's disease (hgma08, 31 samples)Melanoma (hgma03, 44 samples)Lung cancer (hgma26, 118 samples)Renal cancer (hgma41, 101 samples)CRC (hgma412, 46 samples)CRC (hgma11, 52 samples)T2D (hgma403, 53 samples)NAFLD (hgma07, 86 samples)VKH (hgma409, 83 samples)Behcet's disease (hgma52, 24 samples)CRC (hgma46, 61 samples)Colon adenoma (hgma408, 27 samples)CRC (hgma45, 158 samples)CRC (hgma44, 22 samples)Acute diarrhea (hgma48, 10 samples)Chronic fatigue syndrome (hgma34, 50 samples)Colon adenoma (hgma407, 40 samples)CRC (hgma414, 30 samples)Crohn's disease (hgma06, 67 samples)Crohn's disease (hgma17, 4 samples)Liver cirrhosis (hgma300, 90 samples)NAFLD (hgma40, 73 samples)T1D (hgma21, 4 samples)T2D (hgma406, 5 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00061 - Fatty acid biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00780 - Biotin metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko03030 - DNA replication

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00086 - beta-Oxidation, acyl-CoA synthesis

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

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Antibiotic resistance

dfrA

erm

qnr

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Non-ribosomal peptide synthetase (NRPS)

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Downloads

MATLAB species model file: msp_1139.mat