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Peptoniphilus harei

Taxonomy

Image of organism in genus Peptoniphilus harei
Species:Peptoniphilus harei
Genus:Peptoniphilus
Family:Peptoniphilaceae
Order:Tissierellales
Class:Tissierellia
Phylum:Firmicutes

 

Gut outflow:1

Phenotypes

Gram stainingGram+
Oxygen RequirementAnaerobe
EcosystemUnclassified; Human
Ecosystem TypeUnclassified; Reproductive system

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Japan (146 samples)France (61 samples)China (730 samples)Madagascar (112 samples)Luxembourg (52 samples)United Kingdom (259 samples)Austria (63 samples)Sweden (56 samples)Denmark (114 samples)Germany (88 samples)United States of America (629 samples)Fiji (193 samples)Finland (4 samples)India (110 samples)Italy (63 samples)Mongolia (110 samples)Peru (36 samples)Spain (14 samples)Thailand (15 samples)United Republic of Tanzania (27 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Ulcerative colitis (hgma404, 21 samples)CRC (hgma413, 74 samples)CRC (hgma399, 53 samples)Crohn's disease (hgma06, 67 samples)CRC (hgma11, 52 samples)NAFLD (hgma07, 86 samples)Melanoma (hgma03, 44 samples)IGT (hgma14, 49 samples)CRC (hgma412, 46 samples)CRC (hgma46, 61 samples)Cvd (hgma10, 214 samples)CRC (hgma44, 22 samples)CRC (hgma45, 158 samples)CRC (hgma414, 30 samples)Rheumatoid arthritis (hgma31, 135 samples)T2D (hgma403, 53 samples)NAFLD (hgma40, 73 samples)Acute diarrhea (hgma48, 10 samples)CRC (hgma415, 38 samples)T2D (hgma02, 183 samples)Colon adenoma (hgma401, 42 samples)Colon adenoma (hgma408, 27 samples)Colon adenoma (hgma400, 47 samples)Renal cancer (hgma41, 101 samples)Liver cirrhosis (hgma20, 123 samples)T2D (hgma53, 131 samples)Colon adenoma (hgma407, 40 samples)Lung cancer (hgma26, 118 samples)Liver cirrhosis (hgma300, 90 samples)SPA (hgma09, 97 samples)Atherosclerosis (hgma01, 12 samples)Behcet's disease (hgma52, 24 samples)Chronic fatigue syndrome (hgma34, 50 samples)Crohn's disease (hgma17, 4 samples)GDM (hgma12, 18 samples)Obesity (hgma25, 164 samples)Parkinson's disease (hgma08, 31 samples)T1D (hgma21, 4 samples)T1D (hgma35, 42 samples)T2D (hgma406, 5 samples)VKH (hgma409, 83 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00061 - Fatty acid biosynthesis

ko00240 - Pyrimidine metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00780 - Biotin metabolism

ko00903 - Limonene and pinene degradation

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

Show all

KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate

M00045 - Histidine degradation, histidine => N-formiminoglutamate => glutamate

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00115 - NAD biosynthesis, aspartate => NAD

M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00159 - V-type ATPase, prokaryotes

M00364 - C10-C20 isoprenoid biosynthesis, bacteria

M00365 - C10-C20 isoprenoid biosynthesis, archaea

M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin

M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00705 - Multidrug resistance, efflux pump MepA

Show all

Cazyme

GH18

GH73

GT4

GT51

Show all

Antibiotic resistance

aac6

fos

sul

tetM

Virulence factor class

Undetected

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Virulence factor gene

Undetected

Show all

Secondary metabolite

Undetected

Show all

Downloads

MATLAB species model file: msp_1168.mat