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unclassified_RF39_Mollicutes

Taxonomy

Species:unclassified_RF39_Mollicutes
Genus:unclassified_RF39_Mollicutes
Family:unclassified_RF39_Mollicutes
Order:RF39_Mollicutes
Class:Mollicutes
Phylum:Tenericutes

 

Region Enrichment:Peru, United Republic of Tanzania

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Denmark (114 samples)Fiji (193 samples)United Republic of Tanzania (27 samples)India (110 samples)Madagascar (112 samples)Peru (36 samples)United Kingdom (259 samples)United States of America (629 samples)Sweden (56 samples)Germany (88 samples)Mongolia (110 samples)Austria (63 samples)China (730 samples)Finland (4 samples)France (61 samples)Italy (63 samples)Japan (146 samples)Luxembourg (52 samples)Spain (14 samples)Thailand (15 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%CRC (hgma414, 30 samples)Atherosclerosis (hgma01, 12 samples)Colon adenoma (hgma401, 42 samples)T2D (hgma403, 53 samples)CRC (hgma412, 46 samples)Parkinson's disease (hgma08, 31 samples)Renal cancer (hgma41, 101 samples)T2D (hgma02, 183 samples)Obesity (hgma25, 164 samples)IGT (hgma14, 49 samples)Acute diarrhea (hgma48, 10 samples)Behcet's disease (hgma52, 24 samples)Chronic fatigue syndrome (hgma34, 50 samples)Colon adenoma (hgma400, 47 samples)Colon adenoma (hgma407, 40 samples)Colon adenoma (hgma408, 27 samples)CRC (hgma11, 52 samples)CRC (hgma399, 53 samples)CRC (hgma413, 74 samples)CRC (hgma415, 38 samples)CRC (hgma44, 22 samples)CRC (hgma45, 158 samples)CRC (hgma46, 61 samples)Crohn's disease (hgma06, 67 samples)Crohn's disease (hgma17, 4 samples)Cvd (hgma10, 214 samples)GDM (hgma12, 18 samples)Liver cirrhosis (hgma20, 123 samples)Liver cirrhosis (hgma300, 90 samples)Lung cancer (hgma26, 118 samples)Melanoma (hgma03, 44 samples)NAFLD (hgma07, 86 samples)NAFLD (hgma40, 73 samples)Rheumatoid arthritis (hgma31, 135 samples)SPA (hgma09, 97 samples)T1D (hgma21, 4 samples)T1D (hgma35, 42 samples)T2D (hgma406, 5 samples)T2D (hgma53, 131 samples)Ulcerative colitis (hgma404, 21 samples)VKH (hgma409, 83 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00550 - Peptidoglycan biosynthesis

ko00970 - Aminoacyl-tRNA biosynthesis

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00086 - beta-Oxidation, acyl-CoA synthesis

M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine

M00140 - C1-unit interconversion, prokaryotes

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

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Cazyme

CBM50

GH31

GH73

GT2

GT28

GT4

GT51

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Antibiotic resistance

tetM

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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