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unclassified_Holdemanella

Taxonomy

Species:unclassified_Holdemanella
Genus:Holdemanella
Family:Erysipelotrichaceae
Order:Erysipelotrichales
Class:Mollicutes 2
Phylum:Tenericutes

 

Region Enrichment:Non-westernized
(Fiji, Madagascar, Mongolia, Peru, United Republic of Tanzania)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00250 - Alanine, aspartate and glutamate metabolism

ko00340 - Histidine metabolism

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00511 - Other glycan degradation

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko03030 - DNA replication

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00026 - Histidine biosynthesis, PRPP => histidine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00115 - NAD biosynthesis, aspartate => NAD

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

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Antibiotic resistance

aph

dfrA

erm

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_1240.mat