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[Clostridium] sp. CAG:594

Taxonomy

Species:[Clostridium] sp. CAG:594
Genus:unclassified_RF39_Mollicutes
Family:unclassified_RF39_Mollicutes
Order:RF39_Mollicutes
Class:Mollicutes
Phylum:Tenericutes

 

Gut outflow:0.4
Region Enrichment:Madagascar, United Republic of Tanzania

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%United Kingdom (259 samples)Fiji (193 samples)United Republic of Tanzania (27 samples)Madagascar (112 samples)Austria (63 samples)Denmark (114 samples)Sweden (56 samples)India (110 samples)France (61 samples)China (730 samples)Peru (36 samples)Germany (88 samples)Thailand (15 samples)Luxembourg (52 samples)United States of America (629 samples)Italy (63 samples)Finland (4 samples)Japan (146 samples)Mongolia (110 samples)Spain (14 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%T2D (hgma403, 53 samples)GDM (hgma12, 18 samples)Ulcerative colitis (hgma404, 21 samples)T2D (hgma53, 131 samples)T1D (hgma35, 42 samples)Rheumatoid arthritis (hgma31, 135 samples)NAFLD (hgma40, 73 samples)T2D (hgma02, 183 samples)Obesity (hgma25, 164 samples)Colon adenoma (hgma401, 42 samples)Chronic fatigue syndrome (hgma34, 50 samples)CRC (hgma414, 30 samples)Cvd (hgma10, 214 samples)Renal cancer (hgma41, 101 samples)CRC (hgma46, 61 samples)CRC (hgma45, 158 samples)Behcet's disease (hgma52, 24 samples)Colon adenoma (hgma408, 27 samples)Liver cirrhosis (hgma20, 123 samples)CRC (hgma11, 52 samples)Lung cancer (hgma26, 118 samples)CRC (hgma413, 74 samples)CRC (hgma44, 22 samples)IGT (hgma14, 49 samples)Acute diarrhea (hgma48, 10 samples)Atherosclerosis (hgma01, 12 samples)Colon adenoma (hgma400, 47 samples)Colon adenoma (hgma407, 40 samples)CRC (hgma399, 53 samples)CRC (hgma412, 46 samples)CRC (hgma415, 38 samples)Crohn's disease (hgma06, 67 samples)Crohn's disease (hgma17, 4 samples)Liver cirrhosis (hgma300, 90 samples)Melanoma (hgma03, 44 samples)NAFLD (hgma07, 86 samples)Parkinson's disease (hgma08, 31 samples)SPA (hgma09, 97 samples)T1D (hgma21, 4 samples)T2D (hgma406, 5 samples)VKH (hgma409, 83 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00550 - Peptidoglycan biosynthesis

ko00710 - Carbon fixation in photosynthetic organisms

ko00970 - Aminoacyl-tRNA biosynthesis

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00365 - C10-C20 isoprenoid biosynthesis, archaea

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

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Cazyme

Antibiotic resistance

blab3

dfrA

erm

qnr

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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