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unclassified Ruminococcaceae

Taxonomy

Species:unclassified Ruminococcaceae
Genus:unclassified Ruminococcaceae
Family:Ruminococcaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Region Enrichment:Westernized
(Denmark, France, Germany, Italy, Japan, Luxembourg)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Italy (63 samples)Japan (146 samples)Germany (88 samples)Luxembourg (52 samples)United Kingdom (259 samples)Mongolia (110 samples)Finland (4 samples)Denmark (114 samples)China (730 samples)Sweden (56 samples)France (61 samples)United States of America (629 samples)Thailand (15 samples)Spain (14 samples)Austria (63 samples)India (110 samples)Fiji (193 samples)Madagascar (112 samples)Peru (36 samples)United Republic of Tanzania (27 samples)HighMediumLow

Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


0%10%20%30%40%50%60%70%80%90%100%Colon adenoma (hgma408, 27 samples)T2D (hgma406, 5 samples)CRC (hgma46, 61 samples)Lung cancer (hgma26, 118 samples)CRC (hgma45, 158 samples)Colon adenoma (hgma407, 40 samples)CRC (hgma412, 46 samples)Renal cancer (hgma41, 101 samples)Obesity (hgma25, 164 samples)GDM (hgma12, 18 samples)CRC (hgma399, 53 samples)Colon adenoma (hgma401, 42 samples)T2D (hgma02, 183 samples)CRC (hgma413, 74 samples)Ulcerative colitis (hgma404, 21 samples)Atherosclerosis (hgma01, 12 samples)Liver cirrhosis (hgma300, 90 samples)CRC (hgma415, 38 samples)NAFLD (hgma40, 73 samples)NAFLD (hgma07, 86 samples)Parkinson's disease (hgma08, 31 samples)Cvd (hgma10, 214 samples)CRC (hgma44, 22 samples)T1D (hgma35, 42 samples)IGT (hgma14, 49 samples)SPA (hgma09, 97 samples)T2D (hgma53, 131 samples)CRC (hgma11, 52 samples)Colon adenoma (hgma400, 47 samples)Rheumatoid arthritis (hgma31, 135 samples)T2D (hgma403, 53 samples)Behcet's disease (hgma52, 24 samples)Chronic fatigue syndrome (hgma34, 50 samples)Melanoma (hgma03, 44 samples)VKH (hgma409, 83 samples)Crohn's disease (hgma06, 67 samples)Crohn's disease (hgma17, 4 samples)Liver cirrhosis (hgma20, 123 samples)CRC (hgma414, 30 samples)Acute diarrhea (hgma48, 10 samples)T1D (hgma21, 4 samples)HighMediumLow

Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00450 - Selenocompound metabolism

ko00473 - D-Alanine metabolism

ko00550 - Peptidoglycan biosynthesis

ko00970 - Aminoacyl-tRNA biosynthesis

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko03430 - Mismatch repair

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KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00015 - Proline biosynthesis, glutamate => proline

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00159 - V-type ATPase, prokaryotes

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00705 - Multidrug resistance, efflux pump MepA

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Antibiotic resistance

Undetected

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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