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Atopobium parvulum 2

Taxonomy

Image of organism in genus Atopobium parvulum 2
Species:Atopobium parvulum 2
Genus:Atopobium
Family:Atopobiaceae
Order:Coriobacteriales
Class:Coriobacteriia
Phylum:Actinobacteria

 

Disease Association:

Cardiovascular disease (ES=1)

NAFLD (ES=0.302047)

Region Enrichment:Japan

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00300 - Lysine biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00710 - Carbon fixation in photosynthetic organisms

ko00970 - Aminoacyl-tRNA biosynthesis

ko02060 - Phosphotransferase system (PTS)

ko03010 - Ribosome

ko03060 - Protein export

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00793 - dTDP-L-rhamnose biosynthesis

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Cazyme

Antibiotic resistance

Undetected

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_1603c.mat