| Species: | Citrobacter braakii |
|---|---|
| Genus: | Citrobacter |
| Family: | Enterobacteriaceae |
| Order: | Enterobacterales |
| Class: | Gammaproteobacteria |
| Phylum: | Proteobacteria |
| Gram staining | Gram- |
|---|---|
| Ecosystem | Reptilia; Human |
| Ecosystem Type | Unclassified; Excretory system; Respiratory system; Circulatory system |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00030 - Pentose phosphate pathway
ko00040 - Pentose and glucuronate interconversions
ko00051 - Fructose and mannose metabolism
ko00052 - Galactose metabolism
ko00053 - Ascorbate and aldarate metabolism
ko00061 - Fatty acid biosynthesis
ko00072 - Synthesis and degradation of ketone bodies
ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis
ko00250 - Alanine, aspartate and glutamate metabolism
ko00260 - Glycine, serine and threonine metabolism
ko00270 - Cysteine and methionine metabolism
ko00281 - Geraniol degradation
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00330 - Arginine and proline metabolism
ko00340 - Histidine metabolism
ko00360 - Phenylalanine metabolism
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00410 - beta-Alanine metabolism
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00480 - Glutathione metabolism
ko00500 - Starch and sucrose metabolism
ko00520 - Amino sugar and nucleotide sugar metabolism
ko00521 - Streptomycin biosynthesis
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00561 - Glycerolipid metabolism
ko00620 - Pyruvate metabolism
ko00630 - Glyoxylate and dicarboxylate metabolism
ko00633 - Nitrotoluene degradation
ko00640 - Propanoate metabolism
ko00650 - Butanoate metabolism
ko00660 - C5-Branched dibasic acid metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00730 - Thiamine metabolism
ko00740 - Riboflavin metabolism
ko00750 - Vitamin B6 metabolism
ko00760 - Nicotinate and nicotinamide metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00790 - Folate biosynthesis
ko00791 - Atrazine degradation
ko00860 - Porphyrin and chlorophyll metabolism
ko00910 - Nitrogen metabolism
ko00920 - Sulfur metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko01053 - Biosynthesis of siderophore group nonribosomal peptides
ko02010 - ABC transporters
ko02020 - Two-component system
ko02030 - Bacterial chemotaxis
ko02040 - Flagellar assembly
ko02060 - Phosphotransferase system (PTS)
ko03070 - Bacterial secretion system
ko03410 - Base excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
ko05111 - Biofilm formation - Vibrio cholerae
M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00012 - Glyoxylate cycle
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00018 - Threonine biosynthesis, aspartate => homoserine => threonine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00021 - Cysteine biosynthesis, serine => cysteine
M00033 - Ectoine biosynthesis, aspartate => ectoine
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A
M00061 - D-Glucuronate degradation
M00063 - CMP-KDO biosynthesis
M00064 - ADP-L-glycero-D-manno-heptose biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00115 - NAD biosynthesis, aspartate => NAD
M00116 - Menaquinone biosynthesis, chorismate => menaquinol
M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00121 - Heme biosynthesis, glutamate => heme
M00122 - Cobalamin biosynthesis, cobinamide => cobalamin
M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P
M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00136 - GABA biosynthesis, prokaryotes, putrescine => GABA
M00153 - Cytochrome bd ubiquinol oxidase
M00176 - Assimilatory sulfate reduction, sulfate => H2S
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00530 - Dissimilatory nitrate reduction, nitrate => ammonia
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00545 - Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose
M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
M00631 - D-Galacturonate degradation (bacteria)
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00696 - Multidrug resistance, efflux pump AcrEF-TolC
M00697 - Multidrug resistance, efflux pump MdtEF-TolC
M00714 - Multidrug resistance, efflux pump QacA
M00745 - Imipenem resistance, repression of porin OprD
M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N
M00793 - dTDP-L-rhamnose biosynthesis
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Actin-based motility
Adhesion
Biofilm
Capsule
Cell motility
Cell surface and membrane proteins
Cell-to-cell spread
Cellular metabolism
Defense against host immune response
Drug efflux system
Fimbriae
Intracellular survival and replication
Invasion
Iron uptake
Lps (lipopolysaccharide)
Protease
Regulation of gene expression
Two-component system
Virulence
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) (ID:STM474_0645)
3-dehydroquinate dehydratase I (EC 4.2.1.10) (ID:SEN1686)
3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (ID:S0967)
3'-to-5' exoribonuclease RNase R (ID:S4602)
ATP-dependent helicase HrpA (ID:Z2313)
BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)
Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ID:Z4283)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)
Carbon starvation protein A (ID:SL1344_0588)
Chorismate synthase (EC 4.2.3.5) (ID:t0480)
Cobalamin synthase (EC 2.7.8.26) (ID:SG2041)
Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11) (ID:SG2061)
Colanic acid biosynthesis protein WcaM (ID:SL1344_2076)
Copper/silver efflux RND transporter, outer membrane protein CusC (ID:CE10_0570)
Curli production assembly/transport component CsgE (ID:STM1141)
Curli production assembly/transport component CsgF (ID:SL1344_1077)
Curli production assembly/transport component CsgG (ID:STM14_1303)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (ID:Z4251)
D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)
D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) (ID:b3137)
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)
DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)
DTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59) (ID:c4711)
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (ID:Z4136)
Exonuclease SbcD (ID:STM474_0413)
FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)
Galactose/methyl galactoside ABC transporter, ATP-binding protein MglA (EC 3.6.3.17) (ID:Z3404)
GDP-L-fucose synthetase (EC 1.1.1.271) (ID:Z3197)
Gluconokinase (EC 2.7.1.12) (ID:SL1344_4415)
Glycosyl transferase, group 1 family protein (ID:t4349)
GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) (ID:S2725)
Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)
Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)
Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain (ID:S2726)
Lipid A biosynthesis myristoyltransferase (EC 2.3.1.243) (ID:SFK218_2097)
Lipid A phosphoethanolamine transferase EptA/PmrC (EC 2.7.8.43) (ID:SL1344_4230)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)
Maltodextrin ABC transporter, ATP-binding protein MsmX (ID:Z2463)
Manganese ABC transporter, periplasmic-binding protein SitA (ID:SL1344_2841)
Minor curlin subunit CsgB, nucleation component of curlin monomers (ID:SL1344_1080)
Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)
Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)
N-methyl-L-tryptophan oxidase, SolA (ID:SL1344_1097)
N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)
Na+/H+-dicarboxylate symporter (ID:Z4942)
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1) (ID:SL1344_2164)
Osmolarity sensory histidine kinase EnvZ (ID:STM14_4216)
Outer membrane porin OmpD (ID:SL1344_1503)
Outer membrane porin OmpF (ID:c1071)
Outer membrane usher protein SfmD (ID:STM0546)
Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)
Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) (ID:SL1344_0566)
Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) (ID:SL1344_3870)
Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)
Phosphate transport system regulatory protein PhoU (ID:c4648)
Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue (ID:c4914)
Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (ID:STM14_5016)
Protein MtfA (ID:STM474_2081)
PTS system, galactosamine-specific IIC component (ID:b3139)
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) (ID:STM474_0956)
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) (ID:b1224)
SbmA protein (ID:c0482)
Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)
Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)
TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)
TonB-ExbBD energy transducing system, TonB subunit (ID:Sd1012_3335)
Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) (ID:STM14_0641)
Transcriptional regulatory protein PhoP (ID:SF1149)
Transketolase (EC 2.2.1.1) (ID:c3520)
Translation initiation factor SUI1-related protein (ID:SL1344_1638)
Tricarboxylate transport transcriptional regulator TctD => Citrate response regulator CitB (ID:STM474_0647)
Trk potassium uptake system protein TrkA (ID:Z4660)
Tryptophan synthase beta chain (EC 4.2.1.20) (ID:Z2550)
Type IV pilin PilA (ID:Z0118)
UDP-N-acetyl-D-glucosamine 6-dehydrogenase (EC 1.1.1.136) (ID:t4352)
UDP-N-acetylglucosaminuronic acid 4-epimerase (EC 5.1.3.7) (ID:t4351)
Uncharacterized ferredoxin-like protein YdhY (ID:Z2702)
Uncharacterized fimbrial-like protein SfmH (ID:STM0547)
Uncharacterized HTH-type transcriptional regulator YfhH (ID:Z3841)
Uncharacterized protease YegQ (ID:SL1344_2112)
Uncharacterized protein YaiT (ID:Z0469)
Universal stress protein F (ID:STM474_1664)
UPF0118 inner membrane protein YdiK (ID:SL1344_1298)
UPF0187 protein YneE (ID:STM474_1538)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:SL1344_2075)
Zinc ABC transporter, permease protein ZnuB (ID:STM14_2302)
Other secondary metabolites
