| Species: | unclassified Saccharopolyspora |
|---|---|
| Genus: | Saccharopolyspora |
| Family: | Pseudonocardiaceae |
| Order: | Pseudonocardiales |
| Class: | Actinobacteria |
| Phylum: | Actinobacteria |
In the linked pathways:
red=enriched, blue=depleted
ko00010 - Glycolysis / Gluconeogenesis
ko00020 - Citrate cycle (TCA cycle)
ko00030 - Pentose phosphate pathway
ko00051 - Fructose and mannose metabolism
ko00061 - Fatty acid biosynthesis
ko00071 - Fatty acid degradation
ko00072 - Synthesis and degradation of ketone bodies
ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis
ko00190 - Oxidative phosphorylation
ko00230 - Purine metabolism
ko00240 - Pyrimidine metabolism
ko00250 - Alanine, aspartate and glutamate metabolism
ko00260 - Glycine, serine and threonine metabolism
ko00270 - Cysteine and methionine metabolism
ko00280 - Valine, leucine and isoleucine degradation
ko00281 - Geraniol degradation
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00330 - Arginine and proline metabolism
ko00340 - Histidine metabolism
ko00350 - Tyrosine metabolism
ko00360 - Phenylalanine metabolism
ko00361 - Chlorocyclohexane and chlorobenzene degradation
ko00364 - Fluorobenzoate degradation
ko00380 - Tryptophan metabolism
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00410 - beta-Alanine metabolism
ko00430 - Taurine and hypotaurine metabolism
ko00450 - Selenocompound metabolism
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00480 - Glutathione metabolism
ko00511 - Other glycan degradation
ko00521 - Streptomycin biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00620 - Pyruvate metabolism
ko00630 - Glyoxylate and dicarboxylate metabolism
ko00640 - Propanoate metabolism
ko00643 - Styrene degradation
ko00650 - Butanoate metabolism
ko00660 - C5-Branched dibasic acid metabolism
ko00670 - One carbon pool by folate
ko00710 - Carbon fixation in photosynthetic organisms
ko00720 - Carbon fixation pathways in prokaryotes
ko00730 - Thiamine metabolism
ko00750 - Vitamin B6 metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00785 - Lipoic acid metabolism
ko00791 - Atrazine degradation
ko00900 - Terpenoid backbone biosynthesis
ko00903 - Limonene and pinene degradation
ko00910 - Nitrogen metabolism
ko00930 - Caprolactam degradation
ko00970 - Aminoacyl-tRNA biosynthesis
ko00983 - Drug metabolism - other enzymes
ko01110 - Biosynthesis of secondary metabolites
ko01120 - Microbial metabolism in diverse environments
ko01130 - Biosynthesis of antibiotics
ko03010 - Ribosome
ko03030 - DNA replication
ko03060 - Protein export
ko03410 - Base excision repair
ko03420 - Nucleotide excision repair
ko03430 - Mismatch repair
ko03440 - Homologous recombination
M00002 - Glycolysis, core module involving three-carbon compounds
M00004 - Pentose phosphate pathway (Pentose phosphate cycle)
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00009 - Citrate cycle (TCA cycle, Krebs cycle)
M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00011 - Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00012 - Glyoxylate cycle
M00015 - Proline biosynthesis, glutamate => proline
M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00017 - Methionine biosynthesis, apartate => homoserine => methionine
M00018 - Threonine biosynthesis, aspartate => homoserine => threonine
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00020 - Serine biosynthesis, glycerate-3P => serine
M00021 - Cysteine biosynthesis, serine => cysteine
M00027 - GABA (gamma-Aminobutyrate) shunt
M00033 - Ectoine biosynthesis, aspartate => ectoine
M00045 - Histidine degradation, histidine => N-formiminoglutamate => glutamate
M00046 - Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
M00048 - Inosine monophosphate biosynthesis, PRPP + glutamine => IMP
M00049 - Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00053 - Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP
M00082 - Fatty acid biosynthesis, initiation
M00086 - beta-Oxidation, acyl-CoA synthesis
M00088 - Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00121 - Heme biosynthesis, glutamate => heme
M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P
M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00144 - NADH
M00149 - Succinate dehydrogenase, prokaryotes
M00153 - Cytochrome bd ubiquinol oxidase
M00155 - Cytochrome c oxidase, prokaryotes
M00157 - F-type ATPase, prokaryotes and chloroplasts
M00161 - Photosystem II
M00176 - Assimilatory sulfate reduction, sulfate => H2S
M00338 - Cysteine biosynthesis, homocysteine + serine => cysteine
M00364 - C10-C20 isoprenoid biosynthesis, bacteria
M00365 - C10-C20 isoprenoid biosynthesis, archaea
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00533 - Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose
M00551 - Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol
M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose
M00555 - Betaine biosynthesis, choline => betaine
M00568 - Catechol ortho-cleavage, catechol => 3-oxoadipate
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
M00700 - Multidrug resistance, efflux pump AbcA
M00702 - Multidrug resistance, efflux pump NorB
M00704 - Tetracycline resistance, efflux pump Tet38
M00714 - Multidrug resistance, efflux pump QacA
M00740 - Methylaspartate cycle
M00793 - dTDP-L-rhamnose biosynthesis
M00830 - Neocarzinostatin naphthoate moiety biosynthesis, malonyl-CoA => 2-hydroxy-5-methyl-1-naphthoate => 2-hydroxy-7-methoxy-5-methyl-1-naphthoyl-CoA
M00833 - Calicheamicin biosynthesis, calicheamicinone => calicheamicin
M00840 - Tetrahydrofolate biosynthesis, mediated by ribA and trpF, GTP => THF
M00844 - Arginine biosynthesis, ornithine => arginine
M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Undetected
Intracellular survival and replication
Modulate host immune response
Phosphate uptake
Regulation of gene expression
Stress
Virulence
ATP-dependent helicase HrpA (ID:Z2313)
Bacterial proteasome-activating AAA-ATPase (PAN) (ID:MT2175)
CAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases (ID:Rv3676)
Excinuclease ABC subunit A (ID:Rv1638)
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II (ID:MAP1047)
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II (ID:Rv2583c)
Inositol-1-phosphate synthase (EC 5.5.1.4) (ID:Rv0046c)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) (ID:Rv2502c)
Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1) (ID:Rv0820)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) (ID:Rv0491)
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (ID:BCG_0248)
Polyphosphate kinase (EC 2.7.4.1) (ID:Rv2984)
Pyruvate dehydrogenase E1 component (EC 1.2.4.1) (ID:Rv2241)
Two component system response regulator MtrA (ID:Rv3246c)
Other secondary metabolites
Siderophore
Terpene
MATLAB species model file: msp_1818.mat
