Species: | unclassified Phascolarctobacterium |
---|---|
Genus: | Phascolarctobacterium |
Family: | Acidaminococcaceae |
Order: | Acidaminococcales |
Class: | Negativicutes |
Phylum: | Firmicutes |
In the linked pathways:
red=enriched, blue=depleted
ko00061 - Fatty acid biosynthesis
ko00250 - Alanine, aspartate and glutamate metabolism
ko00290 - Valine, leucine and isoleucine biosynthesis
ko00300 - Lysine biosynthesis
ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis
ko00471 - D-Glutamine and D-glutamate metabolism
ko00473 - D-Alanine metabolism
ko00540 - Lipopolysaccharide biosynthesis
ko00550 - Peptidoglycan biosynthesis
ko00670 - One carbon pool by folate
ko00730 - Thiamine metabolism
ko00770 - Pantothenate and CoA biosynthesis
ko00780 - Biotin metabolism
ko00970 - Aminoacyl-tRNA biosynthesis
ko00983 - Drug metabolism - other enzymes
ko03430 - Mismatch repair
M00002 - Glycolysis, core module involving three-carbon compounds
M00005 - PRPP biosynthesis, ribose 5P => PRPP
M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00015 - Proline biosynthesis, glutamate => proline
M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP
M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A
M00063 - CMP-KDO biosynthesis
M00064 - ADP-L-glycero-D-manno-heptose biosynthesis
M00086 - beta-Oxidation, acyl-CoA synthesis
M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway
M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00122 - Cobalamin biosynthesis, cobinamide => cobalamin
M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P
M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine
M00140 - C1-unit interconversion, prokaryotes
M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin
M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin
M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00642 - Multidrug resistance, efflux pump MexJK-OprM
M00844 - Arginine biosynthesis, ornithine => arginine
Undetected
Undetected
Undetected
Undetected
MATLAB species model file: msp_2000.mat